Protein Info for mRNA_6560 in Rhodosporidium toruloides IFO0880

Name: 14928
Annotation: Hypothetical Protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 499 transmembrane" amino acids 45 to 66 (22 residues), see Phobius details amino acids 86 to 110 (25 residues), see Phobius details amino acids 130 to 153 (24 residues), see Phobius details amino acids 169 to 192 (24 residues), see Phobius details amino acids 249 to 274 (26 residues), see Phobius details amino acids 313 to 336 (24 residues), see Phobius details amino acids 350 to 368 (19 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (499 amino acids)

>mRNA_6560 Hypothetical Protein (Rhodosporidium toruloides IFO0880)
MSNELQALLGQAQQAASQGQNPWTAIRTAFYDSVRPTYPGYFVNQIYALSALIAVATVLL
GLCMVVKMKQGTFWLVRIHRATGGSFVVLHYANTYSTLFFLFYAVLQGYIWQTERYTTGQ
WAPNNDVWRMVVWIPGWLAFWLAAWSLAVSHILHLDSSGRPARTFLAEAWFVNAIGFAVP
AGTTAAVAILAWRAHHFYSAALDNYSTLDSALAGLEKSYNGTFNPSAFAGQGAELYQDFE
DNLETFGLFFRWVFIAYLIASMTLFFVLVATATLHLRELRKTMNELTNRAHQSEEAREQE
AVIKRGYDGLVQVTYSIITASVAINVLFTFVCAAGRKVIFDRNFAEVASLLPLWLFAVLG
LPLSLLYLRRLVNNPPPRSAAKEPGTDSRVHAVPLKTHESFSNPSTLADHKVPELVEAHP
MEVMSPVAYHQQHVAPQSEEDYSARNSQSPVPSHASVSPLVEAPFSTVTGQPLYYEARQS
QHHAPDAALASPQRKKGWM