Protein Info for mRNA_6562 in Rhodosporidium toruloides IFO0880

Name: 14930
Annotation: K20353 SEC16 COPII coat assembly protein SEC16

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1680 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF12932: Sec16" amino acids 701 to 840 (140 residues), 102 bits, see alignment E=3.4e-33 PF12931: Sec16_C" amino acids 906 to 1236 (331 residues), 339.4 bits, see alignment E=2.6e-105

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1680 amino acids)

>mRNA_6562 K20353 SEC16 COPII coat assembly protein SEC16 (Rhodosporidium toruloides IFO0880)
MRHQPFPQTGSSASSAGLASPPLGRAALSPPPRSGSAASNASSRQAPAPAQAGPPPRSGA
QQASQTAAPPPRKGPESVASPRSEASFNLASPPTRARQLSQQQPEQRQAPPPKQQSAAPA
FDLPPPRSAPSARPPQRAAQQEVDEPPEFDNSVATAPPPAAAPKKVASTAPASAPYTPAP
SAPSRDSYATPSQPVLPPSQRKPPSTAGGLMRPPVPRAPHQRGASAFGSDSPYGALPTGP
LTSAYEPPQTVEQIKEEEEEEEVPPEQKEPEKPEEFVPSWMQATSNAPPPPAFSNKPRDR
QVKQEQHDEPRFAPPPQRQPLSQPPTRSQQERQPQQRDLADDMNKMSLDERPSQPATQQA
LRPPQSRAPPPSRQQQSAPPIPREGAGPPPRVGGAPPPRGPGAARPPPPMQQQQQQQRPP
QQMQQQPPRAPPQVKPSLQMPMSPERGQVPQLHFEAPSPEVRGDRRGERYDYGGGRITPI
PTMSGIEETPEPREEDEDDYFGRSEAQQTDSQYGMDDSTVFTAADEDRATGPTTPSSQYG
GDWRADSQDAQGYDYLGHQPAQARQQQQQQKPYDPYAPAGQRDLQPPRDVPSRDLAVTPP
AQQRGPTVYASPNKRAVPPRQAPMASTMARANSYDAPPNRKMSTDSYGYDQQRENAYAPP
APQQSQRQPYNPYAGAAAQVRRPASAIDGEPEDLGLERRRAPVVSFGFGGRLIVVFPGGG
RPAYGADSSNPYGSAATSQPSSPSTVHIRKLADVVPSSTDGTAFPGPIFLDGGKANAGKK
RKETLSWLDQRIGELEQEVSYARGAAPPGFEGSGTDDRRRKVESRLLLVKLVKVMVENEG
KLTGSPKVDDAVRAIFTGESTTANGDMAALPTADQLVAASSNKATNASTAPFITYGVSPA
DLDQMTEYLLRGERREAVRHALDRKMWAHAFIIASCVDTDCWKEVTVEFLRTELTPSAEN
PAPGAEGREALRVAYGMFAGLGAESMHQFIPPQALGPGTPALRNGAQFDNGAASAPHSPT
SQERQPLPPSTLAKWQETVGMIVANRTAGDSAALTSLGDALAANGWTDAAHVCYLLSPQT
SLAQGLGMPTSRIVLVGSSPLTGDAIIDLESVQLTELVEFAFSLVPTVKGHDAFVGFPHL
QAFRLYHAAVLADAGNISQAHRYAEAVVNTLKLATKPSPFYHPRLVAQIKTLSERLGAAP
GQKEGGSWLARKVPRPTVNSLWSTFEGGFNKFVAGDEQPTAQQLAARAAVAKQANGAAVG
AFSHFSSIAPGSTSGTLSRAETSHEMNGSNLLHANMPAQHASSRPTSPLATAPSAQAHHH
QSPGPPPVKRAAFKTHHARSSSLGAFAGYEYSPNVAPPWQSYTPPSLPGRNAGNADRSEG
REHEQSPTSPRGPPSTRRPQFAAVEEQLQEDESGFISPMAQFTPSVSPSIAAANQQQQQS
QAQQQTHRRMTTAEELADLGIANSKSKKPAFDTLDEELEAEEGGMPQEKRPKPEENSSGA
ATPATAGSAPKLDDKPTIKPSKSWLGGWFKREASPANAGPGPVKANLGEQTSFVYDEKLK
RWVNKSSKGGEESPATVTPPPRAATASPSKALRNGPPRFMSETPPVPPMPTRAATNPPPL
ARSATSGDLRGDTRPPSAASNPTRPPSAAGMPPRTTGTPSEGGSTRSSAKRKPKYAVYAP