Protein Info for mRNA_6572 in Rhodosporidium toruloides IFO0880

Name: 14940
Annotation: HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,HMMPfam-Nuclear transport factor 2 (NTF2) domain-PF02136,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Nuclear transport factor 2 domain profile.-PS50177,SMART-WD40 repeats-SM00320,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF50998,SUPERFAMILY--SSF54427,SUPERFAMILY--SSF54928

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1588 PF00076: RRM_1" amino acids 183 to 241 (59 residues), 39.8 bits, see alignment (E = 3.4e-14) PF02136: NTF2" amino acids 754 to 904 (151 residues), 24.8 bits, see alignment E=2.9e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1588 amino acids)

>mRNA_6572 HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,HMMPfam-Nuclear transport factor 2 (NTF2) domain-PF02136,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Nuclear transport factor 2 domain profile.-PS50177,SMART-WD40 repeats-SM00320,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF50998,SUPERFAMILY--SSF54427,SUPERFAMILY--SSF54928 (Rhodosporidium toruloides IFO0880)
MLPSKPPPFRPPNRAPQPSAPRPRQEDAQPSERAPPNRRPTAPPQVFPLSQVPVAPRAER
AGVPPRTVGGWASSPSSGGKGTGANAVRKPGQTTVGGWAQPGGSARPGGSAQPANGRSGG
SSAPPGRDGYATGANGVVAAQPGRASGSGGVAASTGYLASTSTSSQPVSATPIPVPANPR
STLYVTQLPSSVTETDLRATFSPYGNLIRVSLRSQSAVFAHIVFSSPYEALSALEALDGR
QPTLLSPASSTEGGSSKGMKIVFAETSDEREARRVPGGGSVPAGLFRVPETPEPSQTQLK
SDPSPQKAQPAVPAHHTNASTAAPESAVQGTENGAVPNEQNGTPTGDWAQKENASKIAPP
TLHYEQHALPSRGYGYRESQKGRITYICTYELPPEAFAAASTDVEAFAKSLEPQVAAAGG
MSVSKAHLGNKDDPRNRHTIKIRFVVPPETVRQLSRERKPSEKQKQKSKDRAAAHYAKKV
AEGAAAQAAASQVAASQSVAESGDGHANEGGAGADGDGDVAMDVKPDVVNDPVLDTVQPV
PVRDPAIPPPAASPSTHTQSFASAAAAPAPSNEPSAAETLDDDGTISLRIPLPPSALTAP
DAARQKRSFLVSQVKRIGAEGKIVLGSRIEGDSVVVSYMQDEESQGRAAADEAQLETAVA
VPAQVEPVVHAEPVRMDEDVKPVIERSPDPQTARTEPPQQLQPVPRRRQDEPQQMDVDDE
VDQLATPTPEPDLARFPLPIMLSSRADTKETYEIVNSFIQEYFRRFDSARSSLELMYTPN
ALFSLRVDAKTPARLPFPPIPFAKNWLVNAGKVASTPTAITNTIRLLPTGSHDLGRTVFT
ARSIPELQVKSRSPPPIVLHLVGDFEEFPEKTIRLFSRTFVIVPKGRAQGVNGTENTEFW
VHSDQLTISHKVPGEPFSLPVLQTPFSPSRYPFIAPATSTSASSATAASAVRAQPAPPPA
QPAAVPPTAQARPFSQFQPHPGMARLQAPEAPAQPVPPVAGPSQAEAQLPAQSSAQTVPQ
PAAFPTPSTSRASSAHLHQPAVQTQPERQAPALTQRSLTDEQPGDVLILSDSSISVSPEV
ERRPLPRPSKTSLGKRPAVEYRSDADSGSNQERRKKKTDNMRATTSAMQRVTESAAAAGQ
APSADELRRLVQQEVAAQLAARGGSTSARSTDDEEAPSPVATAKRQPAKEKERRVEKEAK
TKAKQVQKEKRKQVEALGPELGTGLGADDGRILLRTQSNSQLHSFDGRSNKLRHMIDTGS
SFLAVSHIGDIVQFSCPPNTLTSTVEKLWTSKDDTFRIDDFAWSDSKDTLIVGYLGAKEG
RETVKPPSQVVLFKREQDSRLGARLIETKVPTKPHTLGGVTALTTLPGTGRLRFATGGED
KKIFLWTRSRATQEITAVNIRSEHSSMITSLAPLAGEENRIMSSGKDKRVFVYDVDNQHS
TWQALLDNPVMTVDPVLQDPHLLLARMGSPSNQFAVYDIRRPAGSKAVLTFGYDLAPHRT
TSGALAPTNMGRYLRGSQCDTVFAFPDHEMGVKLWDLRNVRTAQTSSNLKRQDLQAVGRS
KVVSTVFKSRSELCTMELSHFTRIGIRG