Protein Info for mRNA_6592 in Rhodosporidium toruloides IFO0880

Name: 14960
Annotation: KOG2571 Chitin synthase/hyaluronan synthase (glycosyltransferases)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 959 transmembrane" amino acids 580 to 599 (20 residues), see Phobius details amino acids 619 to 643 (25 residues), see Phobius details amino acids 683 to 704 (22 residues), see Phobius details amino acids 715 to 738 (24 residues), see Phobius details amino acids 763 to 785 (23 residues), see Phobius details amino acids 891 to 912 (22 residues), see Phobius details amino acids 922 to 947 (26 residues), see Phobius details PF08407: Chitin_synth_1N" amino acids 176 to 251 (76 residues), 94.6 bits, see alignment E=5.9e-31 PF01644: Chitin_synth_1" amino acids 253 to 430 (178 residues), 225.9 bits, see alignment E=5.8e-71 PF03142: Chitin_synth_2" amino acids 407 to 584 (178 residues), 56 bits, see alignment E=6.1e-19 PF13632: Glyco_trans_2_3" amino acids 409 to 635 (227 residues), 27.6 bits, see alignment E=5.2e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (959 amino acids)

>mRNA_6592 KOG2571 Chitin synthase/hyaluronan synthase (glycosyltransferases) (Rhodosporidium toruloides IFO0880)
MPAYPPSGQGHQGYQDPFSDRHSPRPPHGNPLNASDPRLVYGQAPSAQTPSQQQQRPSGY
ALHDKPSYATSMQTLPTGSSYSLAGGKEFYDDGVYPDEDTESKTPLRSEFGVGHGVQGGY
DPDQPLYAPGGYSPHPAGSYSAQSAYSQGSRLLSRKETSAEAWKQRQRINPKRAQTKKVK
LTQGNYIVEHPVPTAVRNANLSSGSRGGPTEFSHLRYTAATCDPNDFTAENGYSLRASSY
GRETDLLVCITAYNENKILLARTLHGLMLNIRDMCKGKWSEFRKKAERGGVEGGKQGEAW
KRIVVCLVFDGIDPADKNTLDVLATIGVYQDGIMQKSVDGKETVAHIFEYTSQLSVSPKP
ALVEPHPNDPNNLVPVQMIFCLKQKNAKKINSHRWLFNAIGRHLKPDVVCLLDAGTKPGK
RSIYYLWEAFYHDKHLGGAAGEIHVMLGKGGRKLLNPLIAAQNFEYKMSNVLDKPTESAF
GYVAVLPGAFSAYRFTAIQGRPLNQYFHGDGTLAARLGPKGTDGMTIWMKNMFLAEDRIL
CFELVAKANESWVLGYVKPAKGETDAPETAAELIGQRRRWLNGSFAAGVYSLVHFGRYYK
SNHGILRLFFLHIQAIYNTINLIMSWFAVANYYLTFSIIITIVGTSLRSPNDIAGGDPDT
IKCWSGSFLQDDSGNSFDWLGLVNWLFQVIYLMFLALQVILALGNRPKAEKLTYTISIAV
FAFFSLYLIFCTVILTIKAFCPIGSILAKNSGSSINVFLGSTYGPIFAGIAGTFGVYILS
SLLYLEPWHLLHSMPQFLLIAPSFTNILNIYAFCNLHDVSWGTKGSDKVDTLPAAQSKKD
GEEKVVETHEKVQEDIDLGFKATVLRAVEPFVEEEEVVTPTMDDRNKTFRTRFICVWLFM
NACLALAITRLGSSARSRYFQAILWTTFGLSSIRLMGMLWFLVGEWVFRAARFCARGRR