Protein Info for mRNA_6633 in Rhodosporidium toruloides IFO0880

Name: 15001
Annotation: KOG1114 Tripeptidyl peptidase II

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1007 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 590 to 614 (25 residues), see Phobius details PF00082: Peptidase_S8" amino acids 228 to 638 (411 residues), 130 bits, see alignment E=1.1e-41 PF06280: fn3_5" amino acids 678 to 799 (122 residues), 35.1 bits, see alignment E=1.9e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1007 amino acids)

>mRNA_6633 KOG1114 Tripeptidyl peptidase II (Rhodosporidium toruloides IFO0880)
MGAIRERASPTLSLVLLVLLAFAQLASASFASIKAQQDKQKTSATYGGQEIVPGSFLIEV
GGSSLSKRASGAADLTQVLSHLATPPSSSGKPFSLPAFSTARTLAARPSLFNGAVVKVTN
PDLVQKLKEGSESIVKQILEELEGVDGISRAWPLRILPRPFAVLNKDECGGISSGSASLA
ASLASSLAKRSGTTFPPASAYLNDTFDPHVMTGVDKLHNQGILGSNMIKVGILDTGVDYL
NPILGGCFGPGCHISFGGDYTLDPPGPDPYVNCTDHGTHVTGTVGALANPLGFSGVAPNV
QIGHYKVFKCSGGVPEDVLVAALTAATNDNVDVVTLSIGGRSGWLSANPSQVVLERMTSQ
EGIVATVSAGNSRSEGLFFAESPAALVGGMSIGSVDVEQLPAYPAQVIPFGSLPYLSSTP
LDTSSLPASRNGYRLYFTSTTTTVPDDACNPLPDSTPDLSNLITVVRRGTCSFYSKMANI
AAKGGKVAIVYNSPNSDTMIPYYQADGTSLAAVAALRYEEGAKLLGWYNSRPRGLYISFP
RDAPLVTVADNIRGGLMSDFSEFGPTFELFGQPTLSGPGGNILSTFPLALGGLGVIGGTS
MSTPFVAGASALLLSQRKSDSLSPADVRALLSSTASKRETTINGTTFETVLLQGGGLVQV
DKAISTRTIVSPFELMLNDTAFPAHTQKITLRNTNSFPMQYSVSISSAQAYGTYDNGASS
DILISTNPKPVYPQSGTATFSTQRLRLQAGQTYTVTVTIPQPRFNAMTVARFPLYSGYVD
ISGVSVDRKHSEELHIPYFGLAAAMSDMPVLDSTATIYGDVAYPFIAGSGYSIFDAPGSL
SGFETYNILFRLAAGTRFGSVDIILSSDAPPTTIPTERILSTPPNRMARRSRKADLEERN
AASHAAHPVSPRDLEGRGSSTALYSDTPIVGTIESASPLPRDYLVDSPAEFQQYSEFTVP
FAPDYSGVDLQEGTEYRVLIRALRTTADPKLASSYESWVSYPFTIFH