Protein Info for mRNA_6635 in Rhodosporidium toruloides IFO0880

Name: 15003
Annotation: HMMPfam-Peptidase family M48-PF01435

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1096 transmembrane" amino acids 512 to 534 (23 residues), see Phobius details amino acids 541 to 561 (21 residues), see Phobius details amino acids 610 to 633 (24 residues), see Phobius details PF01435: Peptidase_M48" amino acids 897 to 1076 (180 residues), 39.9 bits, see alignment E=2e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1096 amino acids)

>mRNA_6635 HMMPfam-Peptidase family M48-PF01435 (Rhodosporidium toruloides IFO0880)
MAPLALQEAHKSLKTALTRAHGPACPFYHRPQDIPVAASLLVGLSALASPRVPFRTGSSG
ANRLLVVLRRSAPSAQARVQARTFATSVRTPSLAQGPRGFEAGLTGALKGATGTSGVGRA
FQFLAGETGRGILRHAKARVESAERLAANEKSTRTPWFWRTTLPRTGSFASRRDQWTHTL
HASTSLKCDFAPSSTSLDPSHFNDSSDSRSRSRSHHHQHQRQSHAESEFDSAHQSCEGQG
GGQAAPVGGCRSKGPGWGWYLALNERRRRDPQKRAHFRQVYRSMNPDLKDPGMRLCGQWE
AMRWWERRLKMEGRWKRNGGKWSECYEEMIKERDVKLRRLRALMVRLRAGAPNHRLRRRM
VDSATGGRYGPSGSGPFNYEAFRRDYWRSRLAPHRQSGHARRSGAKRSASGFQWLALEQR
RRRAKVGWAFFTWRACEGPADARKWIRRDGLVQKSILGRPQLLSAAPLARPPSTILFATS
APRLASATHSAVRAFSTSASRQIPLPPPSLPLNILFAAPLCPTECALPLLLPLVSILKSS
AALNVLATITRISLTLLPLSFRGKILHSLRERYVRDPTSLASSILGRMVLNSGNAAQLAQ
PSSGFWRWNALVGLPLLLATPLVLLALVALASLERTPITGRWRVVMLSPAEEAELVDSIL
SSADKSPFVTSPPEGTTRDWVTILRKVLELPDEGVSSATGRRRLLGGEVLDQRDWRVRWT
QAVLEALEKGAPAALTASASSSSPSVMPPPPTAFPLEPRPEALGQGAAGWADELVFSKPL
EARHARTEHDEGGVPLRLEYDLLVVDRKDANAFSFGFGPDEVPSGRAAKPRRGVIVVYTG
FIDEILGRSGTDVPLLSQPTPPSAKRSLLGFSRSTSPSTQPAPRDPIAANLVPPILPTDA
QTKALAVLLSHELAHLALSHTLESYASTNLLVPHLARLTTDVLRTILYPVTAILGPFIND
ALGGALNEGARGGLGVLGQAVNSCESRKLESEADVVALRMLATSGIDPHCALSFWEDRLS
SPAHSPDSPTSSTHYPSLSQPNPLRPHSTHEQDSKSLDALLRSHPIDEERVERIRHELRD
WEKWWAEMKGHQAAAA