Protein Info for mRNA_6640 in Rhodosporidium toruloides IFO0880

Name: 15008
Annotation: K10534 NR nitrate reductase (NAD(P)H)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 937 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF00174: Oxidored_molyb" amino acids 127 to 314 (188 residues), 182.5 bits, see alignment E=1.4e-57 PF03404: Mo-co_dimer" amino acids 343 to 490 (148 residues), 156.5 bits, see alignment E=1.1e-49 PF00173: Cyt-b5" amino acids 568 to 638 (71 residues), 67 bits, see alignment 3.4e-22 PF00970: FAD_binding_6" amino acids 670 to 709 (40 residues), 30.3 bits, see alignment (E = 1.1e-10) amino acids 725 to 791 (67 residues), 59 bits, see alignment 1.3e-19 PF00175: NAD_binding_1" amino acids 811 to 919 (109 residues), 72.5 bits, see alignment E=1.1e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (937 amino acids)

>mRNA_6640 K10534 NR nitrate reductase (NAD(P)H) (Rhodosporidium toruloides IFO0880)
MRTPSSPSSASSSSAFSSSASSPLSTAPTTAPSSPKLFASGLAGLPSPFYPPTLAAREGF
ASSHQPDALPSAFPPLPSTSQRPLEADAVTKGTPDEWIPRDERLAPLPDLWKEGFLTPTQ
LFYVRNHGGVPQVTREEAANWTVDISGLVNRPCTLTLTDLLDPRRFQTVTLPVTLVCAGN
RRKEQNVVKKSLGFSWGPAGLSTALFTGVYLADVLEYVEPRAEGAFGEPGYRRPEHVIFE
GAEDLPNGKYGTSQRYRWARNKEKGMLLAWAMNGEALEPDHGFPLRLVVPGQIGGRSVKW
LKKIEVSDRESNHHLHYHDNKVLPATLSAEQARNERNWWYDPKYIINDLNVNLAAARPAH
DEKLVCSPEPEAAYTAEGYVYAGGGRRVTRVEVSLDDGAAWSLADISYPEDLYRSTPFQG
RVWGTLDLTDREECFCWAFWKIKIPLDKLQDSGCISIRAMDESLHQMPSTMYWNPTGMMN
NWWFRVAIHRSTDAAGKTVLTFEHPTMPGLQPGGWMERLKESGQDPANPSFVKVTTEDET
ILAQAKEAAAAKKPKLVMTKPGVDRKITRAELVAHNKEDEPWFVVNGEVYDGTGFLKDHP
GGSESITLVAGEDASEDFMAIHSIDAKLRLADFHIGTLVGGEEAPVVAGEPVAPATPDPI
FLSKTKWKPAKLVSIERVNRDSRVYRFALEHEDQPLGLPVGQHVYARLRRKVCPADAEAG
GADVKVVEGELVQRAYTPVSRQGAKGYLDLLIKVYFRTSAFPEGGKMTLGFEELQVGDVV
EFKGPLGSFEWLGNGSCRWRGVERKVKNIGMICGGSGITPILQVLRGVIHDEQDKDTKLH
VLNANKTEADILMRAELDELSRLAGPERLRQHLVLSKGSDDWAGSLGRIGKDHLVKYMPP
ASPDSLILMCAPPPMQDMVVAHLAEMGWDVATQVVIF