Protein Info for mRNA_6649 in Rhodosporidium toruloides IFO0880

Name: 15017
Annotation: K12580 CNOT3, NOT3 CCR4-NOT transcription complex subunit 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 638 PF04065: Not3" amino acids 3 to 230 (228 residues), 304.1 bits, see alignment E=6.1e-95 PF04153: NOT2_3_5" amino acids 514 to 624 (111 residues), 122.6 bits, see alignment E=1.2e-39

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (638 amino acids)

>mRNA_6649 K12580 CNOT3, NOT3 CCR4-NOT transcription complex subunit 3 (Rhodosporidium toruloides IFO0880)
MAARKLQTEIDKTLKKVSEGVEVFEGIFDKIQASSNQTQKEKLEQDLKTQIKKLQRLRDQ
IKTWMTSNDIKDKQPLIDNRKLIETQMEKFKACEKEMKTKAFSKEGLSAATKLDPKEQQK
VDMCQWIQNMVEELSRQVEQSEAEVEQIQGTKQKKKDSEREQRLEELERLNERRDWHINR
LELILRLLENGNLSVDAVTNVKEDIAYFVETNTEEDFEEDEGIYDELNLEDEEDLFHIGQ
DDHQSSHDSQSVADEPAPPVPPMPKTPAKAEKKQEEPVQEKTPAKAKAAVATPQKKASLD
ATTSRPSVAPTQTPSRSVSGPAASTPQPRSTPAPPLPPIRYAAAAAAANASSQPPAASAA
TASAPSPALAAPSPPAATTASSPGAPAGPPPGLSAPASSAAPASPAAKEEPAKEVASASS
AAPSPALAAPAAPSPAPSGGSTAPASQPPQTADSASPAPSSSDAQQQSQQSKQDARLPGS
LADLVTSFESAKQKSLRRDQDLDAINQVLEAGFSNIPQPLDAEKPKYYVPRTPYATPTYY
PQEPSSQFASSTFFSKLDVDTLFYIFYYSSGTYMQYLAAKELEKSSWRYHRQYLTWFQRC
SAPTTITDTYEVGVYLYFDYEGKFRPFLSHSEAFGAVY