Protein Info for mRNA_6657 in Rhodosporidium toruloides IFO0880

Name: 15025
Annotation: K16302 CNNM metal transporter CNNM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 922 transmembrane" amino acids 40 to 58 (19 residues), see Phobius details amino acids 114 to 136 (23 residues), see Phobius details amino acids 163 to 181 (19 residues), see Phobius details amino acids 194 to 214 (21 residues), see Phobius details amino acids 226 to 248 (23 residues), see Phobius details PF01595: DUF21" amino acids 119 to 284 (166 residues), 120.7 bits, see alignment E=2.9e-39

Best Hits

Predicted SEED Role

"Magnesium and cobalt efflux protein CorC" in subsystem Copper homeostasis: copper tolerance or Phosphate metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (922 amino acids)

>mRNA_6657 K16302 CNNM metal transporter CNNM (Rhodosporidium toruloides IFO0880)
MIQSNNTRHATLATPAALDDPVDDADHPPPNRPSHRHPHLLRTIALALCFFAILYIVPTA
SAASTERVAAPSSSTPTSVLHSLASLTKRQSEAVASTCACKAPEKRGAAFAVKAAFIPIL
VVLSGITAGLTLGYMSLDTTQLNVLAKTGTEQQQKAARKVLPLRANGHLLLVTLLVANMI
FNETLPIVAEEPLGGGLQATIVSIVLVIIFAEIVPQSVCSRFGLQIGAAMVWPTRVLIYI
FFVIAWPVSRLLQFLLGKHEGIVYRRAELKELVAMHAASAGHGDLQTDTVTIVGATLDIQ
AKVVRDAMTDLSNVYSLPITAKLDYETLGKILKSGHSRIPVYEEVPVEGPLAGEKKTQRK
IIGVLLTKQLILLDPEDGIPLRDIPISPLPTVSEHLPLLQILNAFQEGRSHMAVVCRAKP
AFPPPPTTLSPIPSLDTATDVDLERAEGGEGLRKRSRSRSTEDGEHGDGFFHKLFRKRSG
STSSTKSDEGKKEGKGKEEERHRRHSLLGDAAAATSHVSLNKQDLDEAHPVGIITLEDVL
EELIGEEILDETDADETHQPSMRYYIPEEASSRLTDLPGPPPAPSTGLGRQPPQTKPTLA
GGIANTVGRIGKGMVPRSRSAPGKNRAEAGAGQSMMGDGTPVTGSGGGSVAGALGFGGGA
FGGGRRRSASPGAGPGAKASAGQTTRFAANPTVYTPPATAGADSSFTGKPIVQEPASLDH
SPAGSNAQTPPAPISILRRQSPAASGSTTPVSTVPSSPLPLPSSENALHAPTPLSATTAF
PRLSDAVLVERGRRKLVAQGANPSSLSAAECIAAAGTGAVGSQPGSRSATPSGVGRVGSM
SEAVGTTATGAGGGGAILATRTSSGGGQPRAKGAAFKSVAVGRPLPQEGRVAAQSQPASS
SASSMKASTSTSQPAVEEKEAE