Protein Info for mRNA_6658 in Rhodosporidium toruloides IFO0880

Name: 15026
Annotation: HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,ProSiteProfiles-4Fe-4S ferredoxin-type iron-sulfur binding domain profile.-PS51379,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1040 transmembrane" amino acids 596 to 618 (23 residues), see Phobius details amino acids 630 to 648 (19 residues), see Phobius details PF00172: Zn_clus" amino acids 58 to 83 (26 residues), 25.8 bits, see alignment (E = 9.7e-10) PF04082: Fungal_trans" amino acids 293 to 473 (181 residues), 57.6 bits, see alignment E=1.1e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1040 amino acids)

>mRNA_6658 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,ProSiteProfiles-4Fe-4S ferredoxin-type iron-sulfur binding domain profile.-PS51379,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701 (Rhodosporidium toruloides IFO0880)
MEGYGVPSTSSVLATTSTMNGSSGAGHKRGAGRADEDFVHKGSSSAAAKRLKPRQPLSCQ
ECRRLKLKCDREFPCANCRKRNCADICPSGTSKPPGRAVRIAAEFSALLKRVDDLEAIVR
QLGAGDRIPPPLHLEEATKRSTTITKDLEQEIREGPRDSSRGRTSERSDSGGRFAGSSGV
RDEEGEETGVGSADEGIESVMVGVGSLSIADSGRTRFLGAAAGSAYFYPDPNDEEDADAS
SLASEAEREVPAADQVIRYPYIQLGTAYSKTAELERLRAFLPDEAEGRRVSENYWRYLAF
QFTPLEEAVFWEDYWPSAYTSHDPHGTKLACVFMILSLGHLFDPDAPSTPNPDAQHFFIL
SHAALAASRFLANSTLAAVQTLQLSANFHPNYHDLREGGETFFPILGMAVRMLATQGLHR
DGSNFGLTGAELNRRRRVFYELLTLERMQAFISGRPHMFRDTHFDTQMPENASVFDRAKW
QIGILIAKVIDQAFSVATPSYSTILSLDQDMRNLVRDTPPANRSGALPPDSFLVKPQGIP
QLPPGPPPEAASYDLITRMRAHTLDQMFGQVLFYLHKPAFAQALLKYSDEPLKSPWAASV
AAVSLETAVYLLAVAKSFFQLHPVLSPRWWHIWFHAFAGSVAQSSLVIKSPRSMLAPHAW
SQLNEAVALFEAAGADGAPVAAFVPRLRVLREKAFLSLQNAISVPLGLMDPHSSTDVGDS
LAEGTDVSLSILCPPTRLERKQRKKSVVRSSSAGKATGSASPAGDSPTTVLAQMLGATPA
LSEQAPPVTTAWPSSPVEAEPYNPFDSRIAMPGFVGGTKSPPVVSAPYDAATLAYLTAAQ
QPPPNNPVAQFPPVAFLPHQPLPHPLRESYEHADVQGPSKTAMAYAAAAAASSSAYSLSA
GAPSSSDIRPQVPPLPPQAQPVDPSTVQQDPLGMLRQTALLAAHAPPPSSSAPGVSSGVP
GFSPFAGLSPGYGFGGLITPWPAYGEVQAGEGATGAGAVSGAPAESWPWFDVLGAGANGG
SGGAAGPGMPSPLDFSRFPG