Protein Info for mRNA_6666 in Rhodosporidium toruloides IFO0880

Name: 15034
Annotation: K18423 CSE1, CAS, XPO2 exportin-2 (importin alpha re-exporter)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 986 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF03810: IBN_N" amino acids 25 to 97 (73 residues), 43.7 bits, see alignment 3.2e-15 PF08506: Cse1" amino acids 154 to 530 (377 residues), 457.6 bits, see alignment E=4.2e-141 PF03378: CAS_CSE1" amino acids 531 to 977 (447 residues), 466.5 bits, see alignment E=1.1e-143

Best Hits

Swiss-Prot: 44% identical to CSE1_SCHPO: Importin-alpha re-exporter (kap109) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: None (inferred from 48% identity to uma:UM03096.1)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (986 amino acids)

>mRNA_6666 K18423 CSE1, CAS, XPO2 exportin-2 (importin alpha re-exporter) (Rhodosporidium toruloides IFO0880)
MAELAALANVLVSTLSPDAATRRQAERELLQAQAHPSFGQLILQLAQDGTQQKAVRQAAA
LNFKNWIKANWALEDAPTPLTTATAESLKQSVVSIMIALSGEPALQVQVGEAIAIMAEAD
FPDQWQNLVDQLTSQLTTDNFVVNNAILQTAHSIFRRWRSEFRSDTLFLEIKFVLDRFCE
PYLKLFQQTDSILSSGTTLPEDQLSLLLRTLLLLLQLYHDLNAQDLPEFFEDGLGQFMPL
LLKYLEYSPAGAAPADEDEDEEAGDLESAKAEICEIAQLYSLRYLDAFGEGGYLGPFVEK
TWGLLTKLSPAIKYDTLVAKATGFLGTVVKMPSQITLFDNQQTLEAFCEKIVLPNMTLRT
FEEELFEDDPAEYVRRDLESASSETRRQAASDFTRALMEQFEAQVTQIVTQYIGAYLQQY
ASSPQGHWKSKDTAIFLLTSIATRGSTQQQGVTSTNALVDVIKFFSDHVLANLQAAPGAV
HPIVQADAIKFLYTFRMQLTKEQLLSVLPLLIPHLQNPSFVIHTYAAITIERILFIKQNN
AFLFAQGDIRDHAEGILLALFKIIESGTTPQQVAANEHLMKSAMRVIITARQSVGPYYST
VLQHLVAILGEISKNPSNPKFNHFTFESISALIRFVTAANPSSLSTFESALFPPFHIILQ
QDVSEFTPFVFQILSQLLELHPTSSDLPDSYKVLLPPLLTPTLWESRGNIPALVRLLRAF
LGRGAQQIVASGQVTPMLGIFQHLIQSKANDQHGFELLEALIEYLPISSIQQYMSTPIFV
LLLTRLQASKTDKFSQGLLKFMCFAAAIQKSDLNPDMVVGFLDGVQPQPGLFAQVLPVLL
PEVQKAPTKDRKLVAVGLANLLTKSPKMLNEPHVRAWTPTMEALLKLFALPLPISKTTSA
ADGDEVNIVDPEDVGYQASFSKLGASEKPREDPVAYVQDPKDHLAKGLAEASKAQPGKIP
ALLQGVNPEYATPFAQYLQQNGIQLA