Protein Info for mRNA_6696 in Rhodosporidium toruloides IFO0880

Name: 15064
Annotation: KOG3519 Invasion-inducing protein TIAM1/CDC24 and related RhoGEF GTPases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1208 PF00621: RhoGEF" amino acids 249 to 424 (176 residues), 45 bits, see alignment E=7.9e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1208 amino acids)

>mRNA_6696 KOG3519 Invasion-inducing protein TIAM1/CDC24 and related RhoGEF GTPases (Rhodosporidium toruloides IFO0880)
MDYSAFAPARPPQAGYSHGAGLASDGRRAGAQDAPGRPYGPAGLAGHSGSLDLSDPHSFD
AFHPPNSSSSSSNARAPLPLSPPPGSSQAGPSYQPTQGLSNGYSAANRPRPQLSPGLGPS
GGAFPPRSTSPLPHPGANDSNAPRIPRKSSLPPIPGQGGPSSGPAPPLPPLPPSASSSST
QLHADSLGPRDSSGGEQVFNGAAIAAGASAGPSQAAPEAGHAAPASESTASGNAALAASS
SMKRANPLEDLIATETAYVEDLGAVIKRVAAAWSRNNFPPPALDAMFRAIEAVYRINKTL
LAKLNEIGPNPSSPKALGDLLMRWISDIEPAYTRYATTISLDFDLYDPVQSNPKLAPILA
SLPWPSSLPSPPSVVTMDRLFELPYYRVRYYKRLYAKLLRSTQEGRSDHALLVSANEKLA
KLEEMCEEGRKRSVLGPGGREEVMRRRAEEAEEERARQAQEEERAQVEQQPAQPPAMEQR
IPTEDAERLASPPIERREVEQPARAGPPRLNLDLAAATNGLRKEEQRSAVDSPRMESPSS
SSSFRSSGATGVSTANTSAVHAPSPNPSREPPLRVSELERRLNTERTLDIFTMKPRKCKL
QMQPPNLAYQRQLRKASEAVLSFIPTSDPAQRQVRIPRAFVIILTDLFLVCEHVAPEELH
LAGGADLWLLYPPLAGKHLRAADGSNRGEIEVTIMNKERLTFSVEGGDEMRANELKAAIE
EATRFGAAQPRQNSTMSSGAGHSPISPTAPNSALSSSFGPMPGQPPSPLPPGAHPASPIP
PSPLSASSRSDERSAFPHPGPPPLGAGRPPLHLQPVPPSFDSSRRAVSGPAPSIARPERN
ASMTQHGYPAPSPTYANGQVVQSPASSDFHHANGSQSLSPYPRDPYGQPDYRYPGSHSSG
SGRHSPYGPQGSFPQSDFGQYAPPHANGAYPTYPHGGIPRSQSDSAPPAMARPDSRPDSR
QSNGSYSSGRTDNSRGWGAPPPPLPKERSFNGMDFSGRGGPLYATSLRGEPGQGQGGYLA
APQGPVHRSRSADGLRSEALRGAMGPSPNYRAPSQALLEERSTSAPGSSRSASKLSSTHD
DVSPPTSPVEPRIPDKTSVVATMRCKVFLQQHHAQWKSLGTAKLKLFQSMPSNTKQLVVD
SDKGGGKTIISTIVLADGVERVGKTGVAVDLSDQGQRTGIIYMLQLRTEQSATGLFEQLL
LGTDRAGR