Protein Info for mRNA_6713 in Rhodosporidium toruloides IFO0880

Name: 15081
Annotation: HMMPfam-RTA1 like protein-PF04479

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 309 transmembrane" amino acids 18 to 36 (19 residues), see Phobius details amino acids 43 to 61 (19 residues), see Phobius details amino acids 81 to 105 (25 residues), see Phobius details amino acids 118 to 140 (23 residues), see Phobius details amino acids 151 to 176 (26 residues), see Phobius details amino acids 193 to 212 (20 residues), see Phobius details amino acids 234 to 257 (24 residues), see Phobius details PF04479: RTA1" amino acids 48 to 260 (213 residues), 178.6 bits, see alignment E=6.3e-57

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (309 amino acids)

>mRNA_6713 HMMPfam-RTA1 like protein-PF04479 (Rhodosporidium toruloides IFO0880)
MAAGDDWTYYAYRPRYDLAYMGIALFAAAFVVQLFLTLRRRTWYMIPFVIAMIGECLGYA
FRRVSADHLRGRGAALTWYLLQELFLILSPALMCASYLCFGRIITYVGERWTPVSSKWVT
FIFVTQDIVSFVVQGAGGSLYSSDNTKIYPAAKAILCVGFCIQIIGLGIFAIFAGIYHTR
ARRAGVPAGRWSNCLFTLYAGSVCVLVRGIFRTIEFGTGSGGGQGYLLSREGYFYGLEFG
PIVIAALIFCVSYPGYYIPHARSARLFPQDQAQVEGLEAGPSASGSEVEGEKEGLGTGGE
KRRWWSRRA