Protein Info for mRNA_6720 in Rhodosporidium toruloides IFO0880

Name: 15088
Annotation: K11293 HIRA, HIR1 protein HIRA/HIR1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1004 transmembrane" amino acids 699 to 714 (16 residues), see Phobius details PF00400: WD40" amino acids 24 to 49 (26 residues), 15.6 bits, see alignment (E = 3.8e-06) amino acids 67 to 103 (37 residues), 25.7 bits, see alignment (E = 2.4e-09) amino acids 126 to 162 (37 residues), 23.6 bits, see alignment (E = 1.1e-08) amino acids 167 to 203 (37 residues), 18.5 bits, see alignment (E = 4.6e-07) PF07569: Hira" amino acids 677 to 826 (150 residues), 107.7 bits, see alignment E=1.2e-34 amino acids 891 to 946 (56 residues), 61.2 bits, see alignment 1.9e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1004 amino acids)

>mRNA_6720 K11293 HIRA, HIR1 protein HIRA/HIR1 (Rhodosporidium toruloides IFO0880)
MHIIKPSWVSHPDETRPTKPDLTIFTLDVHPDNSRLATGGLDSVVRIWSTVPILNEQAEK
DDERCPKLLSTLTAHTGVIMSVRWNNAGGYLASGSDDRVVMIWAHDGGKGGKVWGTETTN
VENWKATRRLVGHNSDVAGVAWSPDDAYVASVGLDNIVLVWSGQNFELVRKLDAHAGFVK
GLVFDPVGQFLATQADDNSLKVWRTDDWALQADITEPFVDAPKATVVRPTWSPDGAHIVT
PNSMNGPVFCAAVIQRTTWLSPASLIGHPDIVQAASYNPLIFLRDPSKPPDMSNVCSLLA
LCAQGTVSLWFTDTSQPFVVVNDLFDREALDLSWSKDGKQLWASSSDGQVAVLTFDYGEF
APVAPEGTKAALHATYGYTPSRARLVAAPAVVANGFGAAGGAATPGGPAGGTLAQPNTLV
ARKGPGAKRPRTVQLSTQPLPAQQQPVASTSAAAFASAPTLPGSAASAFQQAAQQPVPQQ
MFGAQPPPAAASTSRKRKASNVPVEAGPAAPPPPGAYPYPYPYPADIPPPQIPGYGSAPR
LSSAPYRLAGHALRGDPAPPDEELRELVPAYALYDREVTFRVTNRRRAEGGGKRLAVPQV
VTFGKVALEDSDAKDTLEWRNFAKGERKGEAEITVVTSKKPLWTDYVPKYVVNATGSPVF
SAVSLEDGSLIAWSPTGRRLIPTLVLDAPCSFLTAEGPYLMAITALGTLTVWNLSPSIPK
PRSIYPPLNISSLLASSATRIHPDPAITTSALLPNGTPLLALDSGATFSYDADLAAWTRV
SEAWWSKADTWEGRRGRHGAPGGAAGRGIVKTIEAAVNEIVVDDQQVEQDETTDEEDEGK
KVDGDVEMDGGSADKGKGKAGEGDAESDDDEPRPPKRTVPQGSPTEPQGGAGDFRIAVTL
AHLETRIKAAQALDSPAEYRNFLLAYAKRLADEGLRSKAEELIKELLGPIYHNPNKKEEE
WSPTVLGLQKRDLLREVLRELAKQRTTTPLANEYQDLLKKVQTA