Protein Info for mRNA_6721 in Rhodosporidium toruloides IFO0880

Name: 15089
Annotation: K14554 UTP21, WDR36 U3 small nucleolar RNA-associated protein 21

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1012 PF00400: WD40" amino acids 385 to 416 (32 residues), 12.6 bits, see alignment (E = 3.3e-05) amino acids 667 to 700 (34 residues), 17.8 bits, see alignment (E = 7.3e-07) PF04192: Utp21" amino acids 793 to 1007 (215 residues), 234.4 bits, see alignment E=2e-73

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1012 amino acids)

>mRNA_6721 K14554 UTP21, WDR36 U3 small nucleolar RNA-associated protein 21 (Rhodosporidium toruloides IFO0880)
MSRPTKRARVQQQPASAATPAKPKREPLFAPFRSLGHVSTGVPFVLQSRASKHLQQPALT
VITSLGASWAMWEGQSMRLLFVGPDMGKPITSMAVLNESVFAAAGNMVGRFVRGKEVGRF
VTGGGRTNGAYDSDSDSSDSDSSSSASSSSSSSASSSSDSDSDDEDDPLSPIPESLDNLV
LFGNTLIALSSTGRRMYVWDVPPYIKPASKDPLAKEGEEEGDVAGSETDEEQDERVVTPY
ATLEFPTGFTATKVLHPASYLNKVVVGSKEGEVAVWNVRTGSCIHTFPSSALAGSHPASA
VTSLSQSPAIDVLGIGLATGACILFDVRLGEVLGKVRLEGEGAGEVAALSFRTDSEAQTL
AVASTSGHVALFDLGNEMKLLHLVRNAHEGPVGGLEWVPGQPLMITSGGDNSVKQWLLDT
PTAAPRLLKQRSGHHAPPHFVRYNADDGKSLLTAGADRSLRYTSVVRDSRGYELSQGSIA
RKATRLDVRPSSLKLPLITSLAYSTARARDWDDVVSVSADESLGRSWSVENKRVGKWTFA
TEGKATVSAVTACGNFGLVGSQAGDVQMFNMQSGMKRKVFKVPNAGVTDVRGRHVTGLAI
DALNRCVVVSTLKGALHFFDFQTMKLMSILTLKASVTSILLQRDNGLLAAVCDDLIVRIV
DIETRRVVRELSGPRGRILDIAFSPDSRWIITTSQDSVIRTFDIPTGQLVDAFRTKTVAT
SLTFSPTGDFLASTHVDSVGIYLWANRAQFSDVSLLSFVEEETLEDVALPTVQGVDADAS
LSAISAPSRWEDIQPYTTPDQLADSLLTLSLMPRSRWQTLLNLDTIKARNKPKEAPKAPE
RAPFFLPTLPGVDHRFDFGTSAPNGAAKEKKDDAAQKRKLDFAVGAAVETDFVRRLTSEK
KDGNYQSFFEYLKALSPSNVDLEIRSLSTIPHLEAFLHALLARLRSHRDFEACQTFLAVF
LRIHGDILIANPDTKGPLEAIAEQQKKEAERLIDLTHYNLGTLAFLRGVALT