Protein Info for mRNA_6724 in Rhodosporidium toruloides IFO0880

Name: 15092
Annotation: HMMPfam-Voltage-dependent anion channel-PF03595

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 501 transmembrane" amino acids 20 to 35 (16 residues), see Phobius details amino acids 115 to 138 (24 residues), see Phobius details amino acids 148 to 170 (23 residues), see Phobius details amino acids 188 to 210 (23 residues), see Phobius details amino acids 220 to 244 (25 residues), see Phobius details amino acids 258 to 281 (24 residues), see Phobius details amino acids 288 to 312 (25 residues), see Phobius details amino acids 324 to 345 (22 residues), see Phobius details amino acids 380 to 408 (29 residues), see Phobius details amino acids 420 to 440 (21 residues), see Phobius details amino acids 446 to 468 (23 residues), see Phobius details PF03595: SLAC1" amino acids 116 to 470 (355 residues), 259.1 bits, see alignment E=3.3e-81

Best Hits

Predicted SEED Role

"C4-dicarboxylate transporter/malic acid transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (501 amino acids)

>mRNA_6724 HMMPfam-Voltage-dependent anion channel-PF03595 (Rhodosporidium toruloides IFO0880)
MSQRGSLNPPREQSRGSIPSTTLCFAFLLRSSASALYRTRTTTLTLAPASSVASSLRPTS
RPDFRQITPRMASTAPPATRAPVEELSIDDEITADGNGSNAGRAKFASGLRRRILHFTPS
WFVVNMGTGISSILLYNLPYSFNGLKEIAIAIWLLNVVLFSLFLLMSIARYCIFPTVLYA
MLFHPVQSLFVGCFPMGFATIVNMTVFVAAERWGGRWIWLAWSLWWIDAAISVIIAIGIP
FFVFTRHQHASTLNTVSPAWLLPIVAPNVASATGGIVAAVLPPSQARLTIIISYMLWSSV
PIAVMIMGLLYLRMAVHKIPLATEIFSVLLPLGACGQGAFALLQLAEVGLEHTKATGFWL
DSGRMLGTLPAGTAELVASAVWAGTVCIALVIWALGAFWLLIALLSIVDTAFEGQIPFNM
GWWGLTFPIGTHAVAATTLGRQLGSTAFKVVGTVESVAVVLLWIYIAGMTAIKSIEGSIF
SAPCLGPTGQPPKEAPRKKRP