Protein Info for mRNA_6737 in Rhodosporidium toruloides IFO0880

Name: 15105
Annotation: KOG0516 Dystonin, GAS (Growth-arrest-specific protein), and related proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1054 transmembrane" amino acids 64 to 85 (22 residues), see Phobius details amino acids 139 to 162 (24 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1054 amino acids)

>mRNA_6737 KOG0516 Dystonin, GAS (Growth-arrest-specific protein), and related proteins (Rhodosporidium toruloides IFO0880)
MSSESSVLPRLREVQAGWRTVLPPSPCNSLGRLGGHISRVQRDFERGGVGLQGLLHSLER
RASLPLLAMGFVHFAVVIVALARRVIEAGTSKMDGSASASGTPAPNIPPATQVVPSIGLD
GKPTSRPSPSTDNGGNHFPTAAAVLVGIAAGIAGIVLLYKIYVWISRRRRDPSDDDDLPT
SDGRGLSGGPSPLMGGFATLPSSMSVAFNGGGIDSTGKRSMSGLGGFNSARSRQASWGGE
SWGGFGEKSPNGSGEFSPSPPFSGTLLDSPGSANASRASLSGFPTSPSGRNSFGGPPTMP
RRSFYSSSASGSQLLPASRTFSSVSPPNGVSPGAHVFPSGNRLSGAPHNPLSRIEVVPPS
PLAPPPGSVVATDKSTLDFAPSSGIGKSSDGAPEDWVEAVAAVGGEGEAEERLYPVFDGS
YAHPTTFGAPQQHSFPPSIPSSSAASVRTSTSSAPRSSTSILRPRQSNSNLRSPFVPATS
ANSSDSNISASSSQSGIPPPVPSTARHPPALSISTSSLPSAGSGSPVSRVQGEVQAEPKS
PLERLQMRVERERKGLSFEGEAGKGRGRYDFGNSLKMYNGGATAATATGPPQKGTSSLRE
RVGANSPRFVDGLPHPAASQPFFDPVSTSPQRPRAPPLPVPSSPPQTSSAPYSTQIINGH
PATVFEPSIPAPINSHRSDSPEVYSPRTQQQLQPDFGLPSTSLKPLQTSMAMASTSGTST
AYFSPTLPNATPRPHSPQQDSGLPPSYFYPPGSNVGGLPYLPLQDATTHGYSSGLGTSTT
TSRVRYNTHPAGSSGPAAMQGPISPRTSTYSPLVPPAFREHRSRLSPFSSPAPSPPNGMS
PSASPPASTSPLPATRKLRSPPPERADDSDDAGSSQMWSPATTDSSTISSVSSGSSLLSD
HSGRIHPRREDSESSTSSLLSSPESDATSVAPDSPSFVPGQGPTKGPMNRPNSALEFSNF
LDRYRFHLGSSTTSSNTSSLGLSGSSSPTTDFFNFTSAAVPIPGTMTPTSSSDAGSGSNS
PTPKHLSPLAVAVAAAATSPGVVTPTMTSHQMVS