Protein Info for mRNA_6743 in Rhodosporidium toruloides IFO0880

Name: 15111
Annotation: K06671 STAG1_2, SCC3, IRR1 cohesin complex subunit SA-1/2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1346 PF08514: STAG" amino acids 47 to 157 (111 residues), 106.2 bits, see alignment E=4.9e-35

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1346 amino acids)

>mRNA_6743 K06671 STAG1_2, SCC3, IRR1 cohesin complex subunit SA-1/2 (Rhodosporidium toruloides IFO0880)
MAELVNFVLRCCGCNATIDEHQAEDENGIVENLKDIVDEFKQETNLAYPLISKSKTYKKF
RSSLAQFLSKLVSETAVDDMLYSTSFFEQFQSWVHALSSSQIRAFRHTATVIVLLSVNGL
STLHVDARKQHAQRLRAKEAEEKKSRKDKARLKDMEKQVTEAHERLEMVEQFMEESYTSV
FVNRYRDADAVIRAECISALGSWMKIDPDHWIDGDYLRYIGWVLSDESKEARRESVRALF
SLYQKSAYIGKLTHFTDRFKQQLVDMAVGEHDISVRIQALHVVHQINTQGLLEDEKQRDE
VAMLIFEKEKRVRVAAAEFVQGLFNDAVEEKQGEMNAKGKTAKGRKKGGKKQDDEALARA
VEYKVIAELLVKYGKELDGSPADQDAEDEEDEGSQARENGGDDLDKLGVADVLPARIGGA
DDDASATMPRGRVALAVEALWDSLELLQDWEAMLAYLLKDHSHGGEANGVAKKGKGKAAS
RGKGKKKADKDEDEEMQPLGEGDEDEEDEADKDEQLPQDARLTEEEETVFIEILLACLTR
VTSLTATTKKDKEREDEDLATISRAVIEALPKLFSRNQTYASRIIDILAIPRLISLDLYL
DMQQISAYESLWDDVTKQFLKHTQADVLDQATRTLAHFVAANNLSATNQTKLAELEEKLV
STLRTSAGDDVEGATFEDDECHALTACVARIEKLSKVRNLNATLEDTDGGKVTSALDILD
GIANRGRLGYKAEARMVEHAINVLAGHLTWQLCTVALEARQAEKTDLAAIIAVSERRRTF
LDKLEEYAVGNETNACEGVKQVSLAFVLDIYTMTRQLTSADADPNGLLSELKLALSDELQ
ARCAGYIEAQIERYAEALADERDEDKDETQREPDSDEDASGSDTETEERSQSQRGKKGKG
KKAAAKKGKKAAPKKQDKRRRKTAAQIRADNAKEQAQLVAAKRFEQVLAPFIRVLHSSTF
DLRHYVVLVKHWGRLGAAFDENVKLLLHDLRDEGNYGSASDVVAAIVVDSLKGACELFID
APDSPSVTDEPLISLGRHLQGVVIVRGAHLAIVAQMPAEDHLRIHLDALKWIVGKLAQFE
DAKRKDDRNRALSFFKALAHLLMGIDGRSALKAKTTLDSLLDEREIEVSPTSKTWEPVRA
YQKRLITIMSKDPSIQKAATSEKVKKTRAKGKAKATEAEEDEEVGEEEEEDQLDTQQSRS
STRPKRAAPPTKISQELYSPSKRPRTATPEGDEAEAEGAAGEAENEEDALDTLLREDSPS
QVSQGKKRAREQDDDEADEQEQEPLRATPMAEDAFELGDLPETETQPDYSTGPRGGASGE
RPGFEREASIVSDISLSDVPRKRVRR