Protein Info for mRNA_6751 in Rhodosporidium toruloides IFO0880

Name: 15119
Annotation: K10578 UBE2J1, NCUBE1, UBC6 ubiquitin-conjugating enzyme E2 J1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 362 transmembrane" amino acids 341 to 358 (18 residues), see Phobius details PF00179: UQ_con" amino acids 50 to 159 (110 residues), 62.7 bits, see alignment E=1.5e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (362 amino acids)

>mRNA_6751 K10578 UBE2J1, NCUBE1, UBC6 ubiquitin-conjugating enzyme E2 J1 (Rhodosporidium toruloides IFO0880)
MLPGLPERVTSVSPRRRTPDERPASTSHLAPLDMAAARAGLSTRSAGVRRLLQEARELEN
DDCPDFAAAPLEDDLFSWHFTIRGPGGDYEGGVYHGKMILPSEYPFKPPEIYMLTPSGRF
EVNKKICLSISSFHPETWQPSWGVRTALLALMAFFDTEPKGAVGSLDAPPAERQRLAKAS
QTYRCSACGFDADDSTSFASLRATQEGQQECESGEGAAGRMEKQADVRAVEAEETMGTAS
DSALARSVGGSDEEDEAEGTAHGSPADSTSSTTIFPTSPASSVIRSPSGTRASYGRNHQP
TSPALPPPAHRHPDPSASTPSLAGPLVPPASVGGIGGPPSWVDRAIVVVLLALVAVVVRK
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