Protein Info for mRNA_6754 in Rhodosporidium toruloides IFO0880

Name: 15122
Annotation: K15542 PFS2 polyadenylation factor subunit 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 633 PF00400: WD40" amino acids 169 to 194 (26 residues), 15.7 bits, see alignment (E = 3.5e-06) amino acids 207 to 244 (38 residues), 27.5 bits, see alignment 6.6e-10 amino acids 251 to 286 (36 residues), 32.5 bits, see alignment 1.7e-11 amino acids 293 to 328 (36 residues), 30.6 bits, see alignment 6.6e-11 amino acids 335 to 370 (36 residues), 14.5 bits, see alignment 8.5e-06 amino acids 384 to 414 (31 residues), 20.8 bits, see alignment (E = 8.7e-08) PF08662: eIF2A" amino acids 208 to 320 (113 residues), 24.3 bits, see alignment E=4e-09 amino acids 257 to 352 (96 residues), 24.1 bits, see alignment E=4.5e-09 PF12894: ANAPC4_WD40" amino acids 297 to 351 (55 residues), 23.2 bits, see alignment 1e-08

Best Hits

Predicted SEED Role

"High-affnity carbon uptake protein Hat/HatR" in subsystem CO2 uptake, carboxysome or Carboxysome

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (633 amino acids)

>mRNA_6754 K15542 PFS2 polyadenylation factor subunit 2 (Rhodosporidium toruloides IFO0880)
MATTAPPPPIPVLDSLAPSISAAPSPWQPSTLDEPPAPPPPDTREEQLAQLAAQEKLGHD
GKRQRVRARRTVDPYGGIERWKIYKSVRASQHDQLFIRNQPSYLIDLLPPQAYPNFSTSF
CTRYAHTSTNKLRCPVNIVTFTPDARRILTGSTSGEFTLWNGLTFNFETILQAHDSAVRA
LSWSHSGQWLLSADNAGVIKYFQQNMNNLQIFQGHNEAIRDASWAPNDERFVTGADDGVI
KVWNFERMKEERVLTGHGWDVKCVKWHPTKGLLASGSKDNLVKFWDPRTATVLTTLHGHK
NTIQALAWSPNGNMVATASRDQLVKVYDIRAMKEFATLRGHKKEVCSVAWHPIHHDLLVS
GGSEGSIIHWSLPDPAPKESLEFAHDSNVWSLAYHPLGHLLVSASNDHTTRFWSRSRPGM
RNKGDRFHVGKERAEMGDEDEDDRRGGGGVGGQGFLPGLQHQQRGFAGAMPNFGRGGGGG
GGEGGERPPLPGMGMGGPPPGMGGPPPGMGGGGGGGGGMLPGMGMGRPPLPPPPGMGMGG
GAPGAAIPGFGRAPQHGQGPPQGYGGYDGQQQQQGGRAPLPPGYGDFSGGGGGGGGGMRR
NGPLPSQQESLDRYSSGGGGGQGRWGGGGGGRY