Protein Info for mRNA_6756 in Rhodosporidium toruloides IFO0880

Name: 15124
Annotation: K02906 RP-L3, MRPL3, rplC large subunit ribosomal protein L3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 326 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details TIGR03625: 50S ribosomal protein uL3" amino acids 59 to 264 (206 residues), 217.9 bits, see alignment E=6.1e-69 PF00297: Ribosomal_L3" amino acids 142 to 242 (101 residues), 56.7 bits, see alignment E=1.1e-19

Best Hits

KEGG orthology group: None (inferred from 57% identity to cne:CNE02690)

Predicted SEED Role

"LSU ribosomal protein L3p (L3e)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (326 amino acids)

>mRNA_6756 K02906 RP-L3, MRPL3, rplC large subunit ribosomal protein L3 (Rhodosporidium toruloides IFO0880)
MQALAASVKLLTLTPNTLTRRFARTLATAASSPAPSPSPDPAQAAAQPRVFTPESRRTGV
LARKHGMTALWATDGTRIPVTVLELDAVQVISSQSYPAPSPRHRVRHTVILGCSPRKAKT
THNALLGQFKKAGVEPKMRLAEFEVTEDALVPAGTVISAAHFVPGQHVDVQAPSIGKGFQ
GPMKRHGFRGLRASHGVSISHRSHGSTGQHQEPGRVWPGKKMAGRMGGKNVTTQNLMVER
IDLARNVVYVRGHVPGAPGGFVRVTDAIKKVGWKAKERARRGLDLVSEETGEREVVKGVK
TLPFPTASVEEAKAWPQEIQRVGGFR