Protein Info for mRNA_6757 in Rhodosporidium toruloides IFO0880

Name: 15125
Annotation: K11838 USP7, UBP15 ubiquitin carboxyl-terminal hydrolase 7

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1166 PF13423: UCH_1" amino acids 244 to 513 (270 residues), 74 bits, see alignment E=3.4e-24 PF00443: UCH" amino acids 244 to 573 (330 residues), 162.3 bits, see alignment E=3.2e-51 PF12436: USP7_ICP0_bdg" amino acids 680 to 936 (257 residues), 287.3 bits, see alignment E=1.7e-89 PF14533: USP7_C2" amino acids 948 to 1154 (207 residues), 203.3 bits, see alignment E=7.6e-64

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1166 amino acids)

>mRNA_6757 K11838 USP7, UBP15 ubiquitin carboxyl-terminal hydrolase 7 (Rhodosporidium toruloides IFO0880)
MQPLFDGPIPPAQQQGADDVPVHNISPPPPDTDEPDVNGAGVAQGSGPQTPGGAMDVDYA
NQIVSVEDRDAFAAKHLTDMGEPVEDFQVFSWKLSDYRRLDKRVTSPEFACGGHKWNILL
FPMGNSNGQANDMVSVYLNYGDQKASEGWHVCAQFALAISNPGDPTVYIQSQAHHRFTPE
EQDWGFTRFVELRKLFSVCEGRTKPIIENDETVITAFVRVLKDETGVLWHNFHNYDSKKE
TGHVGLKNQGATCYMNSLLQSLFLTNEFREAVYQIPTQDDTTDTVPLALQRVFYNLQTSD
QSVGTTELTKSFGWKGFDSFLQHDVQEFNRVLCDKLETKMKGTQADGAINRLFCGKMKSY
IKCINIDYESARSEDFYDIQLNVKNLRNLEESFRDYIQVETLEGENRYNAEGFGLQDAKK
GVIFEEFPPVLHLQLKRFEYDMQRDQNVKINDRHEFPLEIDLEPYLDEKADRSESHVYKL
HGVLVHSGDVHGGHYFVLIKPSPDGRWLRFDDDRVVPVRDREVLEDNFGGEAPMANGQPM
PPPNFQQPQQQGVNKPPVKGAMKRFTNAYMLVYIRESRVKQVLKTITVEDVPEHLRNRLE
QERREAEQKKRERDEQHLYLTAKVITEETFRQHQGFDLATFDDRTMPSTPLPSYRVAKQQ
PYLDFRAQVAKDHGYDPNGVRLWVLVNRQNKTIRPDTPISDQDPTLTMETVRDKMASRQH
DLKLYLEYIDPQTKHDWQVLHGTEPPIMVFVKHFDPNKQTLAGVGHFYVHRNMRVMDLAS
KINERMGYLPTTPLKIYEEIKPNMIEQMKMKATFLQSEIQDGDVVCFQVDINDPAVSASQ
DGAPDRQHGFQNPLQMYDYFLNRVVVHFKPKYDDPELPEFALTLSKKHSYDQLAQLAGEY
LKRDWLKLRFTQANGANGAPKSIVRRQSNHTVAEMIQPGYMTPTSNLLYYETLDVSIIEL
ETKKSLRITWVGPTNKEENSYPFLLPKNTTMLEVASDHLRKEVKLAAPDTVGSGQIRIFQ
LSKEGRTQHVFSGQEVVRDIPESTELYAEEILLEEANAEDDERVVQVYHFNRDPQRAHGI
PFRFVLRPGEPFSETKLRLQKRTGSSEKDLAKMKFAIIQPAVFKQPAPIQDDDILADHRW
ADDDLLGMDHPDRRKVVSERGVFIRA