Protein Info for mRNA_6762 in Rhodosporidium toruloides IFO0880

Name: 15130
Annotation: K02942 RP-LP1, RPLP1 large subunit ribosomal protein LP1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 108 PF00428: Ribosomal_60s" amino acids 20 to 107 (88 residues), 102.4 bits, see alignment E=8.5e-34

Best Hits

Swiss-Prot: 77% identical to RLA1_DAVTA: 60S acidic ribosomal protein P1 (CLAH12) from Davidiella tassiana

KEGG orthology group: K02942, large subunit ribosomal protein LP1 (inferred from 76% identity to pan:PODANSg9172)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (108 amino acids)

>mRNA_6762 K02942 RP-LP1, RPLP1 large subunit ribosomal protein LP1 (Rhodosporidium toruloides IFO0880)
MASELASTYAALILADEGLEITAEKITALTSAAGVEVEPIWASLLAKALEGKDVKELLTN
VGSGAGAPAAAAPGAGAAAGGDAAPAEEKAKEEEKEESDDDMGFGLFD