Protein Info for mRNA_6792 in Rhodosporidium toruloides IFO0880

Name: 15160
Annotation: K14396 PABPN1, PABP2 polyadenylate-binding protein 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 238 PF00076: RRM_1" amino acids 117 to 185 (69 residues), 51.8 bits, see alignment E=2.9e-18

Best Hits

KEGG orthology group: K14396, polyadenylate-binding protein 2 (inferred from 55% identity to cnb:CNBB1200)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (238 amino acids)

>mRNA_6792 K14396 PABPN1, PABP2 polyadenylate-binding protein 2 (Rhodosporidium toruloides IFO0880)
MSADASSGRRRSIDDPDSLVPASLSASQQPAQQPASKPAAAAPSSDGTMAADDDPEAAEL
AAMKARVAEMEAEAAKLRELTAASEAAAGGGSAASNGDGSDVNMSDEDRQAVDARSIYVG
NVDYHATPEEIQQHFASCGTINRVTILFDKYTGPKGYAYVEFAEPSLVQNALHLNESVLR
GRQIKVSEKRTNLPGYSARGRGRGGRGGRGGYRGGYQGHGGYSPYPRGRGRGRGRGGW