Protein Info for mRNA_6793 in Rhodosporidium toruloides IFO0880

Name: 15161
Annotation: KOG2375 Protein interacting with poly(A)-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 957 PF14438: SM-ATX" amino acids 23 to 96 (74 residues), 48.9 bits, see alignment 6e-17 PF06741: LsmAD" amino acids 191 to 263 (73 residues), 78.9 bits, see alignment 3.6e-26

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (957 amino acids)

>mRNA_6793 KOG2375 Protein interacting with poly(A)-binding protein (Rhodosporidium toruloides IFO0880)
MAHTQQERVVPGLGSSQVDSPAHDRFCWLLLALVGQTVTVTLKGGTRVRGILASSTPDSN
DLSISLRQAVDLHAPPSTAPKPSLLINGRDLLEIEAANVALDLEGKSDASAQAASSSRER
DSFRTDTDISGASLLGKERQLQAWGASSGGGIEDSIEGGIGGLGDDGLGRSTKGAAGGRG
WDQFAANERQFGLRTDYDDEIYTTKLDRSGADYKERERRAAQLEREIMKGGSALANNAHV
AEERGEQLPEIENEEDRYGAVIRGEGAYVPPGARKAAAARNAQQNGSPASADKAAASTPA
GTSRLPQPTSATSRIPAVPSSGSSAASSATTPSIQAPASTTAAPSSTSPAAAASGTTAKP
YQRSFQDFVTNERVRLEQKRAQMAQAQQQAQQQQQQALKKEQDSKLASLVQWSQTFKNPY
PLSEDVAAIMGKKPGSTASHDAAKKPGSSVASNASPAVSPANTTRTLPAPTPSLTPSSTS
VPPQAAASKVAKPHLPEIPPFNPARAKARQAELAAQKSGVSAPAAPAPVAATPAASTAAA
DAAPTSSLKPKAPTTKLSAKSAAFVFKPNPNASSFTPGASTSSSNAAAAPAAPAPAAAPA
PAPAPAPAQPAGNATPRKPAEPQAPPNPFFGNKVIKRGSSSMHVKEDFTPFKNGVLPEPS
TVAPSWQFSGKPYRSIYPIPPQTAASAAASVVDDSASSIAGSLPGPGGMVDPNNAAAIAA
AQAQAHAAAASGVPLGMMHPHQPHGPPPHFPPQMAAALAASQGGPAPHIPGGPVPPHVAG
MPHHGAYNMYQMAAMAANANGGPVRGFPGQPGPGMQQHGGPHHPHSHPQQHQQHHPGQMQ
HPQHLMPGAGGPPIPPPPFAPQFVPGQGPHGAPMFPSPHMPPSSASASPHISHPSPAASH
AQVPGQAGAGGPPGRYMPWTPVGFVPGQHGGPTPPPQNGPVPPHPGPPPQFVQQQQQ