Protein Info for mRNA_6820 in Rhodosporidium toruloides IFO0880
Name: 15188
Annotation: K00931 proB glutamate 5-kinase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA" in subsystem Proline Synthesis (EC 2.7.2.11)
MetaCyc Pathways
- superpathway of L-citrulline metabolism (10/12 steps found)
- L-citrulline biosynthesis (7/8 steps found)
- L-proline biosynthesis I (from L-glutamate) (4/4 steps found)
- L-ornithine biosynthesis II (3/4 steps found)
- L-Nδ-acetylornithine biosynthesis (5/7 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 2.7.2.11
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (508 amino acids)
>mRNA_6820 K00931 proB glutamate 5-kinase (Rhodosporidium toruloides IFO0880) MVHPLTVVIKLGSSSILHPEPPHFPQIATLSALAETCVSLRALGHRVVIVSSGAIGMGLH RMELPTLAPGKKRAIGEKQALAAIGQGRLIALWDQIFGALKQPIAQILLTRNDIADRSRY LNATTTLSTLLSLGVIPIINENDTVSVSEILHVNKFGDNDTLSAIAAGMCGADYLFLMTD VDGLYEDNPRRVPGARRVAKVRDIEEVRRLVSTSTLGSSLGTGGMETKLIAAELATAAGC ATVITMGSMPTRILTIVQGHNSRTAPPSPTSSSTASLQPISEISASPPSAHVSNRPGVEF ASPTDDSVPPHTLFMPKTSPLSSRRFWILHGLTPRGTVFVDEGAYRAITRGERDGGGGGN GGRLLAAGVLRVEGTFAAGQAVRVCVVLKKGANKERGRSASRKDGRVPSRARSPDHFADR SSEREEKERELARAAEGLSLRDVAAAEKAQKAKEDAEEVIEFGRGLTNYNSVEIDRVKGL RSSDIEKVIGYFEAEHVVESICEVKRTT