Protein Info for mRNA_6821 in Rhodosporidium toruloides IFO0880

Name: 15189
Annotation: K07739 ELP3, KAT9 elongator complex protein 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 556 TIGR01211: radical SAM enzyme/protein acetyltransferase, ELP3 family" amino acids 30 to 547 (518 residues), 731.1 bits, see alignment E=3.2e-224 PF04055: Radical_SAM" amino acids 105 to 293 (189 residues), 68.7 bits, see alignment E=1.6e-22 PF16199: Radical_SAM_C" amino acids 311 to 390 (80 residues), 110.8 bits, see alignment E=5.3e-36 PF00583: Acetyltransf_1" amino acids 397 to 536 (140 residues), 40.9 bits, see alignment E=4.5e-14 PF13673: Acetyltransf_10" amino acids 493 to 541 (49 residues), 26 bits, see alignment 1.5e-09

Best Hits

Swiss-Prot: 76% identical to ELP3_DROME: Probable elongator complex protein 3 (Elp3) from Drosophila melanogaster

KEGG orthology group: K07739, elongator complex protein 3 [EC: 2.3.1.48] (inferred from 79% identity to uma:UM00259.1)

Predicted SEED Role

"histone acetyltransferase, ELP3 family"

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.3.1.48

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (556 amino acids)

>mRNA_6821 K07739 ELP3, KAT9 elongator complex protein 3 (Rhodosporidium toruloides IFO0880)
MAPAPQPSSAEITIRVCSEIVRRLLEAHDKGETVNLNALKTQVASKYGSKSVPRLVDIIS
AVPQEVRDILLPKLRAKPVRTASGIAVVAVMSKPHRCPHIAMTGNICVYCPGGPDSDFEY
STQSYTGYEPTSMRAIRARYDPYEQSKGRVEQLRSLGHSVDKVEFIIMGGTFMSLGESYR
NEFISQLHNSLSGYTGHDVDEAVKYAEQAKTKCIGITIETRPDYSLKPHLSAMLRYGCTR
LEIGVQSVYEDVARDTNRGHTVRATCEAFQLAKDAGFKVVSHMMPDLPNVGVERDMAQFH
EYFENPAFRSDGLKIYPTLVIRGTGLYELWRTGRYKNYSPNALVDIVARILALVPPWTRI
YRVQRDIPMPLVSSGVENGNLRELALARMRDFGLTCRDVRSREVGLHEIHNRVRPDELEL
IRRDYTANGGWETFLSYEDPERDILVGLLRLRKLTPDGTFRDELVKDGQTSMVRELHVYG
TAVPLHSRDPTLFQHQGIGTLLMEEAERIAREEHGSRKIAVISGIGVRSYYARLGYKLEG
PYMTKMLDPLDDDEIF