Protein Info for mRNA_6822 in Rhodosporidium toruloides IFO0880

Name: 15190
Annotation: K20303 TRAPPC4, TRS23 trafficking protein particle complex subunit 4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 137 PF04099: Sybindin" amino acids 8 to 135 (128 residues), 148.5 bits, see alignment E=1.3e-47 PF04628: Sedlin_N" amino acids 69 to 134 (66 residues), 36.8 bits, see alignment E=4.2e-13

Best Hits

Swiss-Prot: 49% identical to TRS23_SCHPO: Transport protein particle subunit trs23 (trs23) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: None (inferred from 61% identity to cci:CC1G_13887)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (137 amino acids)

>mRNA_6822 K20303 TRAPPC4, TRS23 trafficking protein particle complex subunit 4 (Rhodosporidium toruloides IFO0880)
MSGSQTSFGLWIINKAGGLIYSRTYADGLAQLNSNDYLILASTFHSIHAIASRISPVPGS
SGVETIEAETFKMTCLQTPTGIKFVLLTTPSHPSPETVLRRIYETYADHLKDPFYTVEMP
IRSETFDSKMQVAVRGA