Protein Info for mRNA_6837 in Rhodosporidium toruloides IFO0880

Name: 15205
Annotation: HMMPfam-DUF2407 ubiquitin-like domain-PF10302,HMMPfam-DUF2407 C-terminal domain-PF13373

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 387 transmembrane" amino acids 333 to 354 (22 residues), see Phobius details amino acids 366 to 385 (20 residues), see Phobius details PF10302: DUF2407" amino acids 101 to 248 (148 residues), 35.7 bits, see alignment E=1.1e-12 PF13373: DUF2407_C" amino acids 269 to 376 (108 residues), 78.4 bits, see alignment E=6.4e-26

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (387 amino acids)

>mRNA_6837 HMMPfam-DUF2407 ubiquitin-like domain-PF10302,HMMPfam-DUF2407 C-terminal domain-PF13373 (Rhodosporidium toruloides IFO0880)
MSAGYERLDQDPSDHSQPARPPVAPFSSSSSAGLPPPVTTPDAASPNGAIDPFAYPPAGA
RRSNLGAAKWKGKGRATESPSPDGASDQAVDDTEPRKKLVFCVRFTDGQTEDLVDLWVGE
KETVREVKRRIRLLRPDTLTEDGKPRRLRLIQLGRLLPDGVFLLPYTLQLVSRRAKAVSP
NSAGHVGVKEGLQAVGRGIGKVVRGTMGERAGEDEMSLLEKGKGREDEQAEQGEEEEEQI
WLHCSVGEPIEEEEPTEEKDQSTQITPLQGFDRLRDAGFSEQDIENLRAEFRESRQTEAD
DEEHQRALEEQWMSGMTGQEEAVASDSAGTGHYYSLLKGVCIGFFVPFLPLFFFRTQIFT
RRMQIAIILGIVVNLVRQSSSLVQAAP