Protein Info for mRNA_6838 in Rhodosporidium toruloides IFO0880

Name: 15206
Annotation: K17656 MSS51 mitochondrial splicing suppressor protein 51

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 453 PF13824: zf-Mss51" amino acids 77 to 132 (56 residues), 77.6 bits, see alignment 3.1e-26

Best Hits

Predicted SEED Role

"Cytochrome oxidase biogenesis protein Mss51, required for maturation, translation of COX1 mRNA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (453 amino acids)

>mRNA_6838 K17656 MSS51 mitochondrial splicing suppressor protein 51 (Rhodosporidium toruloides IFO0880)
MQSRLANSSQRLARLASPSPRLAQPSNRRTLFGWGKKDKFKDVPKPVLTQDNLFHPLSQS
PFPEMRAKGERIKQLAYCPVSLDKYGEKVHVAYECPDCGFPTHASEERWAEDENHGRYWP
RLREANEDEHDLRSGREMTEFRLPGEQEYEQAVSMGNWDVFLYTRGFPSIDTERARRHVS
KLLTYPITIGSVLHENSPYTIRNQRLLPEGLRSLLALRRTLHPVVKNDAAAAGLPPSPLR
IFILGARAESSLPPRVLAQISHLFPAVPLHIVFIGPESYIPPSSSKSSDDDAQKGVYGVP
SHTRIEHDGKLTITSLRCGYSDVHDVLGPFDPYQDVFFAFSPGFGFPDEHDPLKTQLETN
WHSAVLSILETKCALFCTGFSPADIERDVVALDKVEGIRGEFDWLLTPGENVFGSEKWEI
AEFDPRVAVKTNWGVWGIRGKRYEVRGETIETP