Protein Info for mRNA_6841 in Rhodosporidium toruloides IFO0880

Name: 15209
Annotation: K14328 UPF3, RENT3 regulator of nonsense transcripts 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 444 PF03467: Smg4_UPF3" amino acids 14 to 180 (167 residues), 152 bits, see alignment E=9.1e-49

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

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Protein Sequence (444 amino acids)

>mRNA_6841 K14328 UPF3, RENT3 regulator of nonsense transcripts 3 (Rhodosporidium toruloides IFO0880)
MAPTKSGSKSQGNQRLKLVVRRLPPDLPPAVFWKTVSPWVTREDVDDEGQEGAEKVVWSE
YKQGKVRRSGKDKDSVQSRAYITFRTPDALVAFSRGYDGWSFRDKTGNVSQAVVEFAPYQ
RIPTAPAKADPRQGTIDDDPDFLAFQEALTAAPATPQPAETPAVNPKSTPLLEYLRQQKA
AFKASRKQALAAIKGKGPVVLPGATKAQLATAVHGGVQAPAGKGAKGGKKDKAKEKKGKG
KSKESSRSATPVPGAAASGSGAAKGGKSSKPPTRPASAAGGQATPPAPHIPYPPGSVGAQ
QQQAQRNAALQAQQVRQQLQQQHRAAQQQQRAAQPPQQPQPTAILSPQPQMLRNPARPMQ
QTVSPAPPATFSSTPAVQLPRPPPVLASSAPPTPAGGAGGQRGRGRGGGRGGGDGGGRGG
RGRGRARGRGGAAAAGGPPAGGAS