Protein Info for mRNA_6842 in Rhodosporidium toruloides IFO0880

Name: 15210
Annotation: K02605 ORC3 origin recognition complex subunit 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 725 transmembrane" amino acids 245 to 265 (21 residues), see Phobius details PF07034: ORC3_N" amino acids 35 to 344 (310 residues), 187 bits, see alignment E=5.2e-59 PF18137: ORC_WH_C" amino acids 594 to 725 (132 residues), 71.3 bits, see alignment E=8.9e-24

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (725 amino acids)

>mRNA_6842 K02605 ORC3 origin recognition complex subunit 3 (Rhodosporidium toruloides IFO0880)
MNADDTLWTEPIASTSRAVFTLPYKANDAQEQTEADFADAAALEAYESAWNECNGKIQAT
LSSLHDASLDQIVAFVRTAADGGDSLYTALSGRALLKTGLIVGASPGSSSLLYSSLVRQL
TRPTPANSSTPQPPCLVSRLASRDCSNIKNALRSLIGGFIGSDIEIEADDEGEEEDQHVG
GPATLKSALFVPEDMLNLKAWYEQRFGKKDSDNAPTLVILLEDLETMDGKVLTQMIDTLS
HYVDTLPLVFLVGIATTVDAIYSLLSRKTANKLDASSFFVDPGVSAFNALVRGVFVDSQP
PLSLAPKLYTEMWRTFEDLHHSVDATISFIQVAYMNHFTSQPFASFTRPTSAIPPASAAP
EALRTLPSVITTPDLAATILDPSASPAIILAEVETCRRAISMWNAERSVAFEALLATMDF
WEKRKPMETMLAMVLGEGGEKGLAKTVDDLCSLVLQASSTKLPLFLSFLLDRLSAFLASH
PSLPTDFADFISSQQSVLQPILDAPRPNGRSTLFNSNIAGGLALPGMGVGGGGASDLDKQ
TALRPCTDLLLHEVWFASDSTVMKRFHPTPLPSLFRTLSRLDPFSDPSYQPDPSEPPPVM
HDLAIAYRTYAETHPSGRLANLGEWWGGFELQAADEPEKGDEAGEGRANGDKGKQANGKK
RRRNGGDADEEDEDEDEEESESEDEDEGPARRKQARFLRAIGDLAYLGFIHPTTYKPEHV
LKSVY