Protein Info for mRNA_6844 in Rhodosporidium toruloides IFO0880

Name: 15212
Annotation: K12183 TSG101, STP22, VPS23 ESCRT-I complex subunit TSG101

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1363 transmembrane" amino acids 339 to 357 (19 residues), see Phobius details amino acids 369 to 390 (22 residues), see Phobius details PF05743: UEV" amino acids 440 to 560 (121 residues), 83.9 bits, see alignment E=8.4e-28 PF09454: Vps23_core" amino acids 1263 to 1328 (66 residues), 85.2 bits, see alignment 2.4e-28

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1363 amino acids)

>mRNA_6844 K12183 TSG101, STP22, VPS23 ESCRT-I complex subunit TSG101 (Rhodosporidium toruloides IFO0880)
MNAHAQPTAPAVNGAPPAPVHPQPSTSSAVPSSSAAGADIAQEYAAHYADLANHLLAGYT
SCDFSDVQLVASLADGQQHTLALHSVVVSRSPLLRHLIQAALASAPRPTIFLNIPDPAVN
ANTLGLVLASLYSPTVLSHLNPEIAPSVLATATFLSLTRLANLAYEMCEAAVREAKTPEE
VMRWVAYVERERAAEGGPGATTPITFVGPAMNGVSVPPSPSPSTNSTSLLPSSVNGTAAP
IPATYESRLRIVLLDRITRLPSEMGAFAPATEAQAQPALVNVLKRLPFEMFKAVVEDKRF
EAPGDMERFNFAKKVVAARKALVQQSASPSSPPPEFEEAVVLLFGGGAGGSAVNILRKQR
KPTLWKISNAIKLVVALIHLVLLVDLLFLVPASHARQLVVLSTLEQCHLPHLASSTRNGM
ERTVAALTRHYPHRDQAAAQALAVLAAYPGLLNPEQSDFTYDDGRVELLLSLTGVLPVPI
GPNTYHCPIAIWLPLDFPAKPPTVFVLPSETLAIRKGKNVDASGKVGVPYLDYWARKAEG
CSLTGLIEDLIPVFSARYPVSVVQPKPRPPRPAAAPEATPTQPPASQQTQPPQPPPPRPP
PPAGTPSPANGLPPRPPLPPGATHNGSRPSSGVFEPSASSGFGPAGSRLSGSPAPPPRPP
PPSGSPAQRALPGPNLPVRLQLTQRSHRDRLRLNRPYRHLSVRAQFSAMALPRRHRLQHP
CSHRLSLRLQRLIRRTLSRLQHPPTVIQRQSVRQRRPPSGCSSPSSSFTRIASSRFARCL
DRPSLFARAFFHDQRRASIDSARSYQPSPPQPPRSRHEQPHQPARPYSPAPSETASYASY
AQRPQPPVDHRAQRQAHHASQPSLDSQRGPPPPVSPPQPPPSQPYHQHAGRSLREQTASP
APAPSEAGSASTAPFRSRGPRPPPPPSEYSATGEYGSYMPSSQQTSMRGVPTMTDDDLYS
QASGYSSRHEEVYRVPERAAEPAPLPPPARTATTYYQRAPEPAPYAESAGSSPFEPVIES
RAASGPTVPYQPRQPPRQSSLDSHHGHQPSSTASYAPYGAPHPPYHPPALSAMSSPPPPQ
PPAPPVTAVRANGHLPPLAPYAAVPSPPAPIVSAARTARKARPAKATPLNILDAADDDLA
SPSSASPSSIASPTSVSVVGGPAAPPPVPPNPALLALRTRVHSKLVSSLTSLAHSTEAEL
SQLDLMRVDLEKAQPAIEDEMARLEAVRSVCLGVRDRYAEVVDQAEGRLREYEARGEGVE
VDEIVCGSTVVYTQLLDLVAEDAALEDTIYALGRGLNSGTANIDLDRFLKRVRLLAKEQF
VIRATINKILLGLAIRRERSAQASADANGNASGRGTPVGSGGD