Protein Info for mRNA_6855 in Rhodosporidium toruloides IFO0880

Name: 15223
Annotation: KOG1601 GATA-4/5/6 transcription factors

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 415 TIGR00229: PAS domain S-box protein" amino acids 139 to 235 (97 residues), 41.8 bits, see alignment E=5.4e-15 PF00989: PAS" amino acids 139 to 234 (96 residues), 49.7 bits, see alignment E=8.7e-17 PF08448: PAS_4" amino acids 144 to 235 (92 residues), 30.2 bits, see alignment E=1.1e-10 PF14598: PAS_11" amino acids 148 to 232 (85 residues), 29 bits, see alignment E=2.5e-10 PF08447: PAS_3" amino acids 159 to 237 (79 residues), 49.8 bits, see alignment E=9e-17 PF00320: GATA" amino acids 370 to 401 (32 residues), 56.4 bits, see alignment (E = 4.4e-19)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (415 amino acids)

>mRNA_6855 KOG1601 GATA-4/5/6 transcription factors (Rhodosporidium toruloides IFO0880)
MQGNQYYTSQQPYYGQPTPSASTSLAQQHPHGEMSMYQQQMGHAHQQQHSQPQYQQQHTL
QTRDSTAGPSRQSASHRRDHSMSAASGGAGGQAGSAGSGAGGSSTRHPAAPYQRPEGASH
TVKASSTTSLFTTRKNWSEHILQELQDFMQVLSPAGNFIFASASVKDLAGWTADELFGQS
IFDYIHQDDAQAFKRDFEQSCRTGDTLTLYYRFKTKDDRHVLFEVTGHPYYEGGKPQQSP
NQPAKCFFAMARPYPSKNQSLLDGFLELKFENERLRQELLLMYKEVEGDGSSGSFPYGQP
GMYRGDSFDASRSTVIDPATGLVQTSTLIPSTSNTYGALGIGISATGTKGDGTGEKRKKK
SRVEEGEFVCRDCGTVESPEWRKGPDGPKSLCNACGLRYAKLVSKAKKEQKAAKA