Protein Info for mRNA_6861 in Rhodosporidium toruloides IFO0880

Name: 15229
Annotation: HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 533 transmembrane" amino acids 79 to 98 (20 residues), see Phobius details amino acids 118 to 137 (20 residues), see Phobius details amino acids 146 to 167 (22 residues), see Phobius details amino acids 173 to 192 (20 residues), see Phobius details amino acids 204 to 222 (19 residues), see Phobius details amino acids 235 to 256 (22 residues), see Phobius details amino acids 277 to 301 (25 residues), see Phobius details amino acids 315 to 337 (23 residues), see Phobius details amino acids 346 to 366 (21 residues), see Phobius details amino acids 371 to 388 (18 residues), see Phobius details amino acids 409 to 428 (20 residues), see Phobius details amino acids 434 to 456 (23 residues), see Phobius details PF07690: MFS_1" amino acids 85 to 382 (298 residues), 73.8 bits, see alignment E=6.4e-25

Best Hits

KEGG orthology group: None (inferred from 42% identity to lbc:LACBIDRAFT_333006)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (533 amino acids)

>mRNA_6861 HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473 (Rhodosporidium toruloides IFO0880)
MTAAAHEPADDPASPAPAAAGRPPLFSRLFRRRRHDEDDLAEDRTVVEEEPPSKRDFGFL
PIPRRCRYSPDRPFIFTRSLNWLFAFGATIEVANVYYVQPIQVQLSERYGVSYETVTRIL
SLVQAGYLVGLVFITPLGDLVPRRPLLLALIFLSATLTLGQAAAPTFAGFEGLTFVVGLF
TVSVQVFVPLTADLAPPEKRASSVSITLSGLIAGMVWGRLFGGVMTRFTSSPNHVFWLAA
GTQYALLVLMWAFLPAYPKKRTGLNYWQILRSMVTLFFTKPVLTQASLIALLSCSVMVSW
WTSLTFLLDASPFHYNSFEIGLFGLCGIVSVVWAPWAGKLTDRISGWNATLLALCIQLAT
QAIALGAAQLNLAPVIICCILVDVAHQTHTIGNQHRIFKVDPQARSRINAVYMAMVFTGQ
ATGSSAGPKVFLRYGWRACYALSLALTATAILLLFLRGPSAIPEQWVGWGGRYSLRPDVL
EGREAKAVDGEKAGRGVKKGGSAVDAQAVEEKKLESDTPAFPPQTRALEAGTT