Protein Info for mRNA_6871 in Rhodosporidium toruloides IFO0880

Name: 15239
Annotation: K17600 VPS54 vacuolar protein sorting-associated protein 54

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1735 transmembrane" amino acids 895 to 916 (22 residues), see Phobius details amino acids 960 to 980 (21 residues), see Phobius details PF07928: Vps54" amino acids 893 to 1024 (132 residues), 177.4 bits, see alignment 9.8e-57

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1735 amino acids)

>mRNA_6871 K17600 VPS54 vacuolar protein sorting-associated protein 54 (Rhodosporidium toruloides IFO0880)
MATPRYSPPAESASASRVSLASAGAGSNAGTVRAGRASTLDGRDGLTRNPYDISTVLAEP
QASSSLLPALPTLPSASSYLPSQLSSLSTTFTSAGTLPRSATPGGKSVAQRRSQAPPIQV
TELRKVQRTEFDAYLKEIGGEFERWQKESRLGRDGEVDLGDEGSVDERHEDGVGLGIGSD
AENSRTPRILPSPRPKKAEEVLPSLDEVPQIFFDSSFTLSNPRTFELVTERIQLSPHPSP
DPSKPPPQLASADSTPTLSASSAFDSVPGLGPHTLNDLAADQVLQEKLSHYTAVIESHLV
REIGLRSSSFFAALSNLQSLHQQGEDALSKIAELQTALSATEGGVGGTAKHGLQILRAQA
RRRGLERIEESVRAVEEVWSAVEGVKELVEHGEWDGALDVSEQIEDAYYSSASTSTSDKT
ASTSALTTRNGAKASNRRPLNLTKLRALSSLPSKLSLLRAQIAKSLEGELTTVLEHEMDV
AIDEHVKLAKEGKRWKGKQKAVESASEANGRALENVPEEDGEEADGTGRQDSPEAGARER
TVERVRPVMRALIRSDGMDSAVTAWRESVLREIRALVREHLPTAETPTAEEEDQFAQAAI
RSVSKQSIDLGTISEKSLSLAKKLRALPHPAFLALARETYRGLLACIEVVDLQARILLEL
WQFGRQEEQQRRFKRRKAHADAPTSESAPPASPTTLQVPGAEADAVQTSASTANDASSVT
TDDASSLSTEISDVVHAVAELANVRFSKVIGVRTEVHAQLPLADFVEIFDRTWQFVVDCE
TVCQRMIVGLRGAMVSQAKTFLQTFHQRQITDNARVVEEEQWAAAEVPARVQKEIAVIVD
SAVRDPVQLLLRRQPDATNGTATVDDSSEQAREGDEGEASASGPAKQVDIEGRQFFAVSA
GLTTIGVLVEYLKVLLNCPMLTTDAMSKIIEFMKVFNSRTCQVVLGAGAMRSAGLKNITA
KHLALASQALSIMIALIPYIRECVRRHLNPKQAVMLTEFDKLKRDYQEHQYEIHAKLVAI
MSDRLEVHSRTLSGINWEEPAPKADAPNAYMEGLVKEHITLHKVLSRFLQPETVQQIMSQ
VFKALDLRLGELYGRVDLRSQQAKDRMLLDVRYLREKLGDLGGLEGQGPAKDLEALVNAK
ALPKPPPSAPKPSLPPRTSSMAPAAASVPVLAPSDATDSPASSTPHLPYASVSASASAAS
LSLPDTRSPRTSLDGTATPASSVPNPPSPAPLPAVLPPSPKPATPAPYVSKKKKSLAERL
AESMGRKATPSPPAPALDASAATTPAAPRQSSESVASDARPSSDSHDAPPEPQRTSAESD
IGVDTPSIERQLELENVEIPLATPAKEELEDVVKAVEEELKEEKPEEVAEGTVKEIKPDE
AKLEEAEPEEAEAEGAGSTSDAEASTDSIATPEPVEVEPAPEESAVAVQEVVEATAPPAS
PRPVTLELVDTGSSASPNTSPDQPDVPTGGTVEEAPLLPAPSAPEPSADGNEEAGDQEVA
LSPQGVNVSADPSEAHGAAPEAPEVAPAATNAVDEPAPAESLASHADKTLSPPPPTIAEP
SVPSFDKAQPEQAAAEAISSNEPFAVSQTPADTPTVSAVVIAPQALSSDSPVPPITTPPP
VPTPTKKKSLKERLEEAARRRSSTGSLVDVTSPPASIKSPPPTQQSFPPTLTNGSSEGKE
NGVQREESTAKQDPGTAADGANTEEVKASSQPAAQEGAENGAAVDVKTEEEGSFL