Protein Info for mRNA_6890 in Rhodosporidium toruloides IFO0880

Name: 15258
Annotation: K09496 CCT4 T-complex protein 1 subunit delta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 549 TIGR02342: T-complex protein 1, delta subunit" amino acids 23 to 532 (510 residues), 843.9 bits, see alignment E=2.1e-258 PF00118: Cpn60_TCP1" amino acids 43 to 532 (490 residues), 496.1 bits, see alignment E=5.3e-153

Best Hits

Swiss-Prot: 71% identical to TCPD_SCHPO: T-complex protein 1 subunit delta (cct4) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: K09496, T-complex protein 1 subunit delta (inferred from 77% identity to mgl:MGL_3910)

Predicted SEED Role

"Heat shock protein 60 family chaperone GroEL / Thermosome subunit" in subsystem GroEL GroES or Staphylococcal pathogenicity islands SaPI or Thermosome, archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (549 amino acids)

>mRNA_6890 K09496 CCT4 T-complex protein 1 subunit delta (Rhodosporidium toruloides IFO0880)
MATAAPAAPAATQGQAGGHKRAFQGSEKPMEVRLSNLTAAKAVADAVRTSLGPRGMDKMI
QTAQGEVVITNDGATILKHMSVLHPAARMLVDLSAAQDIEAGDGTTSVVVLAGSLLGAAE
KLLGKGIHPTVIAESFARAAAKVVEYLEDMATPVNLKERDNLLRAATTSLSSKIVSQYSS
ILAPIAVDSVLRLVTPESDNVDLRDIRLVKKVGGTIDDTELMDGVLLNQNVITSAGGPTR
IEKAKIGIIQFQLSPPKPDMDNQIVVNDYRQMDKILKEERLYILNLCKAIKKSGCNVLLI
QKSILRDAVNELALAYLQKLKIMAIKDVERDEIEFLSRALGCKPISDVEQMTSDKLGEAD
LVEETSKNGAKFVKVSGIKNPSGKTVSVLCTGANQLVLEESERSLHDALCVVRCLVKKRF
LICGGGAPEIEASRLLGQHAQTLKGMEAYCLAAYAEALEVVPTTLAENAGLNPIAMVTEL
RNRHANGEKTAGINVRKGVISNIVDESVLQPLLVNTSAIQLASETVGLLLRIGAPPSFLF
MTASVGVGH