Protein Info for mRNA_6891 in Rhodosporidium toruloides IFO0880

Name: 15259
Annotation: KOG2104 Nuclear transport factor 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 124 PF02136: NTF2" amino acids 7 to 121 (115 residues), 111.9 bits, see alignment E=1.5e-36

Best Hits

Swiss-Prot: 60% identical to NTF2_SCHPO: Nuclear transport factor 2 (ntf2) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: None (inferred from 61% identity to cnb:CNBL2410)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (124 amino acids)

>mRNA_6891 KOG2104 Nuclear transport factor 2 (Rhodosporidium toruloides IFO0880)
MADINAIAKQFTDYYYQVFSADRKNLAPLYRDHSMLTFEAQQFQGTNAIIEKLASLPFTS
IQHRVTTMDAQPAATDKASMIVLVTGQLITGDETNALNFSQAFHLMPENGSYYVFNDLFR
LNYG