Protein Info for mRNA_6902 in Rhodosporidium toruloides IFO0880

Name: 15270
Annotation: HMMPfam-Fungal family of unknown function (DUF1776)-PF08643,SUPERFAMILY--SSF51735

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 660 transmembrane" amino acids 596 to 614 (19 residues), see Phobius details amino acids 634 to 655 (22 residues), see Phobius details PF08643: DUF1776" amino acids 164 to 463 (300 residues), 78.9 bits, see alignment E=2.3e-26

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (660 amino acids)

>mRNA_6902 HMMPfam-Fungal family of unknown function (DUF1776)-PF08643,SUPERFAMILY--SSF51735 (Rhodosporidium toruloides IFO0880)
MSSLSDLINDTLQQAQEISLQAWNTVFPEELSELHDLPANIHASFRTLVDKITNQGTLPI
PDPRGWLPDQLNPSTPPPPPPAPASSRASSWLRALGSHAAEHPLVYSAVAVGVTGGASYY
FFPQATLGAVSPLARLVPLAILPDPKNRPLRLLPATHGVAGEVRKEAVVVLGADSPQGRE
IALDLERRGFVVVASVSEPVEVDVLEKLGRGWIKVLVLDANESSSVSPFLRSLSTALSLR
FPLHSSGDLFARPAQALALTGVVNCLSLTSIAESPCPLEAFENDQARKFVGERVTTVIGV
IKGLLPILRSAAARPGAPTGVLVSLVPAASSNLAIPFHSLTSAANAAISSLLHSLRREVS
ASSMRNVQIALLEIGFFRDSITNPPAATALPIRLESVYAPALARRVAPASDAGVRASSRC
ARKGSEMRRLSNRVWQILVRPTHAGAVERIGSGSRTYLLVSYFPHAFVDVCLAIQDRLYG
VYLSHLRHILTSDRWSRLTSLTSRSSRPSRPLPTPPTQQRADHPSSLRPSAPAAAAPSQV
PIGDPFVPSPAASTPVDSEHEDSGSQSSIEDFPLGASTASMGGSFVSVGRDEAEGSAFGS
LRLGLAVSSFSRFVRSETRRRLTSDTDFPRTRRALIPAVLLSLFSLVPFLANLAPLAPSD