Protein Info for mRNA_6935 in Rhodosporidium toruloides IFO0880

Name: 15303
Annotation: K12830 SF3B3, SAP130, RSE1 splicing factor 3B subunit 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1210 PF10433: MMS1_N" amino acids 78 to 606 (529 residues), 519.3 bits, see alignment E=1e-159 PF03178: CPSF_A" amino acids 857 to 1176 (320 residues), 309 bits, see alignment E=4.3e-96

Best Hits

Swiss-Prot: 64% identical to RSE1_USTMA: Pre-mRNA-splicing factor RSE1 (RSE1) from Ustilago maydis (strain 521 / FGSC 9021)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1210 amino acids)

>mRNA_6935 K12830 SF3B3, SAP130, RSE1 splicing factor 3B subunit 3 (Rhodosporidium toruloides IFO0880)
MVHLYHHSLIPSSSITCACVGNFSGTKQQEICVARGGQRIELLRTDAQTGKLESIVEADV
FGQIRSLTAFKLTGGSKDYIIIGSDSGRIVVLEYDPNNNVFNKLHQETYGRSGSRRIVPG
QYLATDPKGRAVMIGAMEKSKLVYILNRDAAANLTISSPLEAHKPRAIIHSIVGVDVGFE
NPMFAALEVDYTEADQDPTGAAFDAAEKMLTYYELDLGLNHVVRKWSEATDPRANLLVQV
PGGQNATMDRFDGPSGVLVCCEDYIIYKHQGAKEHRVPIPKRAHPLADPERGVIITAAVM
HKMKGAFFFLLQSEEGDLFKVTIEHEEEEVTALKIKYFDTVPSASSLCILKSGFLFVATE
FGNPRLYQFEKLGDDDDETEFSSTDYDNLGAGTDPLPPALFRPRELQNLAIADEVESLAP
ILDAKVANYLGEDTPQIYAACGRGARSSLRILRQGLEVMEAVSSELPGAPIAVWTTKLRA
EDQYDAYIILSFVNGTLVLAIGDTIEEVSDTGFISSAPTLGVQQLGDDALLQIYPRGIRH
ILADKRVNEWKVGARETIVCATTNSRQVVIGLSTGELVYFELDMDGQLNEFQERKPMGAE
ILALSIAEVPEGRQRTPYLAVGCADSTVRIISLDPENTLDSLSLQALTAPPSSIVMAEIT
DASIDKYHATMFVNIGLNNGVLLRTVLDPLTGSLGDTRTRFLGSRPVKLARVPVQGSPAI
LALSSRPWLNYAYRGILQFTPLIFDALDYAWSFSAELCPEGLIGIVGNSLRIFTFPRLGQ
KVQQTVIDLSYTPRQLLTSPHSRLLYTVEADHRTFSPSAIQKTISDMRMAEMEVDEEVLN
LDPKEFGLPRGPAGQWASCVRVIDPVTAETVFKVDLEQNEAAFSAAIVTFHSHPNEVFLV
VGTGQDTSLAPRACKQAYLHTYKLLEEGRQLELLHKTEVDDIPKALIAFQGRLVAGVGKA
LRLYDLGKKKLLRKAENKGFATMIMTLNTQGTRIIVGDAQESVYYALYKAPENRLLIFAD
DISPRWTTASIMVDYETVAAGDKFGNFFVNRLPKGVSSDVDDDPTGAGIMHEKPYLMGAP
HRTHLLAHYHIGDIITSLHKVALVAGGRDLLVYTGLMGTVGVLVPFVSNEDVDFFTTLEM
HLRSEAPSLCGREHLAYRSAYTPVKATVDGDLCEVYRSLPMAKQGQIAGELERTVSEVIK
KLDNVRASAW