Protein Info for mRNA_6941 in Rhodosporidium toruloides IFO0880

Name: 15309
Annotation: K02154 ATPeV0A, ATP6N V-type H+-transporting ATPase subunit a

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 868 transmembrane" amino acids 443 to 468 (26 residues), see Phobius details amino acids 489 to 508 (20 residues), see Phobius details amino acids 569 to 590 (22 residues), see Phobius details amino acids 602 to 624 (23 residues), see Phobius details amino acids 663 to 683 (21 residues), see Phobius details amino acids 769 to 786 (18 residues), see Phobius details amino acids 798 to 825 (28 residues), see Phobius details PF01496: V_ATPase_I" amino acids 36 to 857 (822 residues), 1025.4 bits, see alignment E=0

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (868 amino acids)

>mRNA_6941 K02154 ATPeV0A, ATP6N V-type H+-transporting ATPase subunit a (Rhodosporidium toruloides IFO0880)
MGDYEVTQYPSLLRSEHMTLVQLFCPIDVAHATVEALGDLERIQFKDLNPDVNPFQRTYV
SQIRRCDEAERRLRFLTQQIASQGIHIRPASETLALLSGRSGPQALDDLDSRLSESESRV
QAMNTSFENLEKRALELEEARQVLRETERFFLEAQGGRGAPGDYRASFEQGEMEAPLLGD
VEHAGPAGGAGDAAAGGFELEFVAGTIDRSRMATFERVLWRVLRGNLYMNSAEIADDVLP
VPSTMQGTSDSAGGEEKRLRKNAFVIFAHGQDLLDKIRKIAESMGATLFAIDSSSDKRSD
KLREVTSRIEDLHSVLYNTNQTRRAELLKIADSISAWWALVRKEKVVFATLNMWLWDQGR
KTLVAEGWVPTRDIPQVQAALRRASENAGTSVSALLHELRTTKTPPTFHRTNKFTEGFQN
IIDAYGIGSYQEVNPGLFTVITFPFLFAVMFGDIGHGALMMLSALVLIALEKKFGKKGMG
SEILDTFYFGRYIIFLMGAFAIYTGIMYNDIFSLSLRLGPSQWRWPDEGSAGKAVEAIQT
SSRYWIGLDPGWHGAENALIFTNSLKMKMSIVLGVLHMSFAICLQVLNHLHFNRPELIWA
EFLPQILFMESIFGYLVVCIVYKWSVDWEAAGRNPPNLLNMLIQMFLSPGNVNPDDQLYR
GQAFVQVFLLLLALVCVPWMLCTRPYLEYREMHKIKEQGYHGIQNGENGAHATDDETDTD
GEGAHQGHAVAMTEEAEEEGHDLGEVIIHQVIHTIEFCLGCISNTASYLRLWALSLAHAQ
LSEVLWNMTIENAFGFEGVLAVVMLVFLFAMWFVLTIAILCVMEGLSAFLHALRLHWVEF
NSKFFIGAGTAFDPLTFEGTDEIPEGVI