Protein Info for mRNA_6984 in Rhodosporidium toruloides IFO0880

Name: 15352
Annotation: HMMPfam-Fungal specific transcription factor domain-PF04082

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 696 transmembrane" amino acids 533 to 551 (19 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (696 amino acids)

>mRNA_6984 HMMPfam-Fungal specific transcription factor domain-PF04082 (Rhodosporidium toruloides IFO0880)
MQPLASTSAGSEQFDTPSPIDVAPAPSSKGKKKERDEEDDGDDGAKPPVKKRNRKNAAGG
EKLKCDRGYPCGACRDRGEGHMCDWGDAIRLPQPHLTRDAEAQELRLQLDRLEGLLGALS
AAAGLTGPPGPAAGGPSTGMAEENAAEALGLLAANSSTTATGPSSMSSAAHRAQVLANNP
TVSHLVALLPPKKELESLVNRFLNNEHLYFPIVHVPTFQARLAAFNASNATEAPLFLGLV
FAILAHEMRWQATEPGATKKAVLEKENAGKRFCEAALEALRMGSYLEQPTFDAVRALLVL
HRFGEQNMDARSTHFLSQAVQLGQMIGLNRDAVGVPGISVIELEERCRVWHMLLAADWLD
CSGRPSAIATSQFDVKPFTDAYDADITPDGITPRPFPAFTPTLLLGVQGHLAAIAHNISE
TAFAVKGALSLTCKFIDDQNAALAGVKASLPALQFDGDAVIPLDQANFASDRFRVQAHSA
ALQLTIRLNRSFLARGFADPRFAKYRHACLSAAQELLGLFLGYDDAHPVSRFAFLAYHCL
NALLILVVDVFNDPRGLYAEKNRRLIAQVSLRMHSREKTPINAEVLRIMAVLMEAVQSQP
QRPAATPSTSSAPLAASTHLVHPLPSPLTNDPFALNRLDALATSSSVPDLAKIWSTLATS
FKTMYAAPDFEEWRELVKVGAGAKEVWSGGVGLIAA