Protein Info for mRNA_6991 in Rhodosporidium toruloides IFO0880

Name: 15359
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 536 transmembrane" amino acids 20 to 33 (14 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 97 to 116 (20 residues), see Phobius details amino acids 122 to 145 (24 residues), see Phobius details amino acids 157 to 179 (23 residues), see Phobius details amino acids 191 to 212 (22 residues), see Phobius details amino acids 286 to 308 (23 residues), see Phobius details amino acids 323 to 343 (21 residues), see Phobius details amino acids 351 to 370 (20 residues), see Phobius details amino acids 387 to 411 (25 residues), see Phobius details amino acids 425 to 446 (22 residues), see Phobius details amino acids 452 to 471 (20 residues), see Phobius details TIGR00879: MFS transporter, sugar porter (SP) family" amino acids 26 to 474 (449 residues), 269.2 bits, see alignment E=3.1e-84 PF00083: Sugar_tr" amino acids 29 to 485 (457 residues), 299.8 bits, see alignment E=3.8e-93 PF07690: MFS_1" amino acids 60 to 406 (347 residues), 91.5 bits, see alignment E=5.4e-30

Best Hits

KEGG orthology group: None (inferred from 71% identity to ani:AN3498.2)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (536 amino acids)

>mRNA_6991 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MSTSTPLWKRLFPTASRLNVAIQAFSLIAICLEGYDQGLMGGVNAAPDYVRTVGIGEYPS
GHVTSTVHQGGIVSIYYLGCIVGCFVGGWVADRFGRINGILGGAIFAMIGGALQAATQNS
AFILGARVVTGLGTGALTGIVPVYCSEVSGKEHRGRFLGLVFIANYLGISVAYWLSFGLA
FVDNGLSAVRWRFLLAFQCLPAILLVAGIRLLPDSPRYLASVGRQDEARDVLEHIRGGSS
AETDAELLAMAEEAQYNKGTSVVEFVKILIGKGSTSLHHNVARRAWLCIWLQIMASWTGI
TAVTAYSPVLLSQAGYSSIKQNGLAGGLNTIGIVGTIISAFIVDRYGRRSCLMMGALGLA
IVNLVAASLYEASLHNPSISARIAPAAVTMLFLFNLVYASTWGTIAFLIPAEIFPSEMRS
QGNGYGITGWAIGVGWTVLVNPIMFGSIGSRSYFLFAGLNLLWIPIVWLFYPETGFGRNL
ESLTHLFDGGAFNWQMEAAYRRAIEDPDRPVDVAKYEAAGSQRFVEDASTGTSEKV