Protein Info for mRNA_6997 in Rhodosporidium toruloides IFO0880

Name: 15365
Annotation: K17053 ABP140 tRNAThr (cytosine32-N3)-methyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 472 PF13489: Methyltransf_23" amino acids 143 to 303 (161 residues), 53.3 bits, see alignment E=7.8e-18 PF13847: Methyltransf_31" amino acids 154 to 267 (114 residues), 32.4 bits, see alignment E=1.9e-11 PF13649: Methyltransf_25" amino acids 156 to 259 (104 residues), 47.9 bits, see alignment E=4.6e-16 PF08242: Methyltransf_12" amino acids 157 to 261 (105 residues), 54.8 bits, see alignment E=3.5e-18 PF08241: Methyltransf_11" amino acids 158 to 263 (106 residues), 44 bits, see alignment E=7.5e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (472 amino acids)

>mRNA_6997 K17053 ABP140 tRNAThr (cytosine32-N3)-methyltransferase (Rhodosporidium toruloides IFO0880)
MTDTSNTENTMPAEHAAAAAPAPDTALASPAPQVARRKQPQLLADQLVAEELIEGAPSRN
GGRRLEEGRDPWSHNAWDQVEWGEEEERFAQSALEKQRNSPVPQHLQDKFNADPAAQWDV
FYRHNKDNFFKDRAWLRTEFPELAECLKADAGPKRIVELGCGNGSTLFPLLAANENPKLD
LHGYDYSKEAVSVVKTHPFFDPTHLTCEVWDLSSPAGPPPTVEPNSVDVLTMIFVFSALH
PDEWARAVENAYRMLKPGGVLLFRDYGRNDLAQLRFKANRFMQDGLYVRGDNTRVYFFER
DELVYLFGGIRQKAKEATTGDATPSDAMPSSATPDDATPAGSTTTTTTATTDTTRTTDTT
TRDSTSSAPPNSDAIDAALEAATGLLTTTTLTEDATGAISTSTTSAALPSTSFSASRTDD
SLTPYRFDLLQLGVDRRLLLNRKRQLKMFRVWMQGRWRKPLEATADETDTQA