Protein Info for mRNA_7020 in Rhodosporidium toruloides IFO0880

Name: 15388
Annotation: K11446 KDM5, JARID1 histone demethylase JARID1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1045 PF02375: JmjN" amino acids 167 to 200 (34 residues), 56.6 bits, see alignment (E = 4.9e-19) PF01388: ARID" amino acids 235 to 320 (86 residues), 66.8 bits, see alignment E=5.7e-22 PF00628: PHD" amino acids 421 to 465 (45 residues), 40.6 bits, see alignment (E = 4.7e-14) PF02373: JmjC" amino acids 611 to 727 (117 residues), 146.5 bits, see alignment E=1.1e-46 PF02928: zf-C5HC2" amino acids 815 to 863 (49 residues), 41.1 bits, see alignment 4.9e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1045 amino acids)

>mRNA_7020 K11446 KDM5, JARID1 histone demethylase JARID1 (Rhodosporidium toruloides IFO0880)
MASPSPPLATFISSMDLVFSDDEGDAGPSSASSSRNGTPSSSLGMSGETESAPSTSKGRM
VASSGGRMSVRASKASALAALQLKNRQQAAAAAAASTSAELTPEVKSEPIVEEEPLGAHP
SKNSARRAMKLPRAPPLDFSTLRTEAPRLPNPPPRQKPRLFELEEAPVYHPTIEEFAQPM
EYIESIAQEARQFGICKIVPPEGWRPTFAIDTETFRFKTRLQQLNSMEATARASLNFLEQ
LYLFHRQQGSTGMSIPSIGGKPVDMWKLKREVNALGGYAAVTNGRKWTTVGKALGYNVAS
NTGICSQLKMSYYRIIVPFEEYVKRVKLAGGQAPPDPIKEASHVGDTSDAMKAFASKLAD
TPKQQPNGSEELLTPMSETGPSRRSQVEPNERVRTASDKLNEALELKPTTRHKTRRPGEA
CEICTLDHDPDRIVLCDECDRGYHLHCLTPPLKQVPTSQFYCDKCLLNNGADYGFEEGQD
HSLYSFRRRADAFKRKWLQEHPLPLSKGKGREDDAPMSEENGDDVWKEQIAIEDHFEREF
WRLVESPRETVEVEYGADVASTKDGAGFPNIEVHPLNPYSRDGWNLHNLPILAGSLLRYI
KSDISGMTIPWIYVGMVFSTFAWHKEDHYTYSINYHHLGDTKTWYGVPGADDEKLEAVMK
ESAPELFDQQPDLMFQLVTLMSPERLKKNDVRVYAADQRPNEFIITFPGAYHSGFNHGFN
FNEAVNFALPDWLEDDLRCIERYREIKKNPVFSHDELLITIAQWERDPRTASWLSPHIRE
MVDRELELRERIRASESAPDELVEPFDRVEEEYQCEHCKTMCYLSQIITEDARSIACLDH
GSTLPTGTKILRVRFTDAELSQLASRVHNRALKASRLPEPTAGTPEAADAPRQSGRKRKP
SAALLEAAGEMALPAAQRVKVIHEESEESDEDDEEQAEDAGAQENGIKAEDMPIEQGDIA
VDPALSFAAPAPPPVAAPPPVPAAASGDIIVDSGIYTPQRSPSPQAGPSYASSAYQQTQL
RFSPPRPGPSSTPLPPVSQAPWGRW