Protein Info for mRNA_7023 in Rhodosporidium toruloides IFO0880

Name: 15391
Annotation: Interpro RNA polymerase I-specific transcription-initiation factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1113 PF10214: Rrn6" amino acids 916 to 1113 (198 residues), 32.3 bits, see alignment E=2.1e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (1113 amino acids)

>mRNA_7023 Interpro RNA polymerase I-specific transcription-initiation factor (Rhodosporidium toruloides IFO0880)
MSASGASASRPACGRCSQDPLRAQTCDGEYPCLACVQTGSPCRYPPLPALNSAWTSAADD
TVQRWSESTTLVPGMDGGLRLSVQRDEEGDLTGFQGETMVDQREGLRLHVKRGSGSQLFP
ATVDDRDEAEAVDLIGDSCRYNTDGTILRQLHANLPNDPLHPAIHLNAVLRSRPPRTTSR
ILTTFEPTNPNLGNAIAVLELPHDQGVGTSTSVAWRTADKAGGRAAGVGWGTFAPAPRPQ
RSAKGKGRAVEAEDAELAGIAFAPSPAPLFSTHSPIQQLQLASLPTTPTALLAVRSLTSL
DLIHLHPHPPDSPSPNLPSVLSRFTYTGADFGRRPIADVALGGYTPFDGGPGSGLVVDTD
GSLFGWGLGARGSGRIGDTDCKGRRPEVFRLRRGRKKGIGEYSGMARVEWGGARGSDAVV
ALQDEVLLYDLRSPSASLTLLDKDLLSLHLPFGDAAPALVTSLLQPLPRPYAVASPTSLH
TVCTTRDLVWLDERMPGREVLRRQHGRVGIEGKGFDHTLSLLEIPPHADDPPSTQRIALH
SRLHPQIEIFTTDASPTDAPHSTLDPYFVHNPPLPPSFVRAGLSILPIPKTTSGSSGAQP
AEDRMDVDESDSDDEDLPAPAQRRRFEGPTRPPRSWQVLEVGIRGDVHSFELSSALDDVG
GEGVMTGRIWSEDLQTLAEEADEIRRRRLPQDRPSESQLRSRRVAQLRDVLQASVLGASA
EPDREGDEAAPDKVLDEAGRLVRESTAIDVEGDVGGLTGFELLRLARLKLDSTNQAGSSK
SLASTVGSLPRQSAYTSSARDPADPLPLADSLASLATARLDLRERGRQQPFSCHLPTNSL
ASEEDEDGDREADCHEMSRRRDLLAGSQVLLPRSVEPDEPTLAPNQPQPATEDQPPLHFC
YLKPRQGDADDSDEDAAALKRGRQRKPRKRRAAPSLDALGARLIAGEWHVGADPRSYAWH
NPYEGEKNKDDVYSQSQASPSKRGRKARKREGTAFDPVPSSSSQPFPADFGSAFPSSSPF
PASSQAYFPSLAPPRVPPTIAEEPRPPASSQDWRQLAATQPAISINGPSDSQTQSLGFSG
TASQGVPGNFGSRLAVGVKAKDKKKGKKRTAGF