Protein Info for mRNA_7026 in Rhodosporidium toruloides IFO0880

Name: 15394
Annotation: K12827 SF3A3, SAP61, PRP9 splicing factor 3A subunit 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 533 PF12108: SF3a60_bindingd" amino acids 88 to 107 (20 residues), 36.9 bits, see alignment (E = 6.6e-13) PF16837: SF3A3" amino acids 136 to 225 (90 residues), 77.4 bits, see alignment E=2.4e-25 PF12874: zf-met" amino acids 264 to 287 (24 residues), 31.5 bits, see alignment (E = 4.4e-11) PF12171: zf-C2H2_jaz" amino acids 264 to 287 (24 residues), 28.4 bits, see alignment (E = 3.9e-10) PF11931: DUF3449" amino acids 344 to 532 (189 residues), 237.5 bits, see alignment E=2.5e-74

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (533 amino acids)

>mRNA_7026 K12827 SF3A3, SAP61, PRP9 splicing factor 3A subunit 3 (Rhodosporidium toruloides IFO0880)
MASSVIEDARGLAEDADLFERSLTSLLLTLQAPVITHRDRLATTHRASDLLTRIVDRSDA
LYGSLQPSNEERNREIDALSGGGAQGGDLAEFYQRLAKIKDYHRKYPTGTNVRVGGDREV
DFAALEGGDAEWLDKKFTGEEALGRYLDLHELHDEWNNLAPPSSSGQASAGGWKRYTYLQ
YLGAVTNFSLSPQLKSSPAYAKYLTNLLSYLSNFYERVLPLGDLDTVLKAADDDFARRWE
AGEVPGWAQPAEEDEQQKESEGIWCAACQKSFTKESVYTAHLTGKKHVKAAAKLAADSSA
DSASPAPSSSNLAALRHQKNRAIALKESLITSLLSSTATPPGPLAQILTDTLANTERRAA
LTDKERAAEIEELEAREAAEAAAAAAAAQSKNGPANGAGDDEDEDEGRIYNPLKLPLGWD
GKPIPYWLYKLHGLGVEYKCEICSDHVYQGRKNFERHFQESRHAFGMRALGLPNTKHFHE
ITKIEDAIALAEKLKQEGRAELSQAELTEELEDEEGNVYNRKTYEDLKRQGLV