Protein Info for mRNA_7035 in Rhodosporidium toruloides IFO0880

Name: 15403
Annotation: K11826 AP2M1 AP-2 complex subunit mu-1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 420 transmembrane" amino acids 381 to 399 (19 residues), see Phobius details PF01217: Clat_adaptor_s" amino acids 1 to 128 (128 residues), 22.9 bits, see alignment E=7e-09 PF00928: Adap_comp_sub" amino acids 159 to 411 (253 residues), 267 bits, see alignment E=1.8e-83

Best Hits

Swiss-Prot: 55% identical to AP2M1_MACFA: AP-2 complex subunit mu (AP2M1) from Macaca fascicularis

KEGG orthology group: K11826, AP-2 complex subunit mu-1 (inferred from 75% identity to uma:UM03144.1)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (420 amino acids)

>mRNA_7035 K11826 AP2M1 AP-2 complex subunit mu-1 (Rhodosporidium toruloides IFO0880)
MISAFFILNLKGEVLISRLFRPDLKRSISDIFRIHVIASSTPPTSPLITISNTTFFHVKH
GGLWLVAVCKHNANAALVYEFTYRFINLGRSYFGKLDEESVKNNFVLIYELLDEILDFGY
PQNSESDTLKMYITTEGVKSEQAVREEASKITIQATGAISWRRNDVKYRKNEAFVDVIET
VNLSMDSKGTVLRADVDGQILMRAYLSGTPECKFGLNDKLVIDKPCVSIDGNAVELDDCQ
FHQCVKLGKFDSDRTISFIPPDGEFELMRYRATSNINLPIRVQPIVEEIGKSRVEYTVHV
KTMFPAKLSANNVVIRIPTPLNTASVECKVGMGKAKYVPGENVIVWKIPRFQGGSDTTFT
AEASLSQTTVRKAWSRPPISVDFQVLMFTASGLLVRFLKVFEKSNYQSVKVRRRSFPLQH