Protein Info for mRNA_7044 in Rhodosporidium toruloides IFO0880

Name: 15412
Annotation: KOG4299 PHD Zn-finger protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 767 PF00628: PHD" amino acids 131 to 178 (48 residues), 36.2 bits, see alignment 2.3e-13 amino acids 263 to 311 (49 residues), 31.9 bits, see alignment 5.1e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (767 amino acids)

>mRNA_7044 KOG4299 PHD Zn-finger protein (Rhodosporidium toruloides IFO0880)
MPRASSISSQPAEGAAGEPDTSNNPSGTPTPDLDDLDPLAQQELEAFGTDALDDSLPAPP
KDHSVLQPGAAVGQDGGAGTKRSLGAAEPLARAKRPKNVKFSPAKTGKQLARRAAAPGST
QGDVQLPNNDFCDSCGGKGHFLCCEGGCLRSFHFSCLEPPLEIDEVPDESWFCKACRAAA
HPPPKPRAGFFTDLIYEVETKNPKQFSLPNEIKNFLRNVATGTNGEFIDSVEHRPPSKIT
GRAIGQEDRDGYRLKDKNGRPIICYNCDEAASAVKRRRIISCDFCDQSWHLDCLDPPMTG
MPPPTRKWMCPLHTDHIVPKRRQTKTTQTITVDQPYRSNNGDIIVMPSRDPAPREEIEEM
TLNRVRYQIPERHVILDFWGRLTGQKVAPSPKKAGKAPRKRSAVSGYDSGDLSPLSDLTS
SDDDSESEGDARRKKVSSASPNSLDNLALLAEVRYIDLLNQQSTTNGSPGKDKGKAVARD
VPSPLPNSNQRRGPRPSAPVPASAASTSKRPTAAAPGGTPGGPSRSRGGSPSLSPAPKAT
ELVVTSKEDLQALMRVRKLSKAKEGSDTDGWKAALFGFLDGEPILPKLDFLKADSTPWRR
PWEQGGAGGPGQKKPGHAGSPSFSPLPSPAANAATQRDPLSTAAPIPTASAIAPVSTPPA
SAADAAPTFAAPATAAATPAEPENVDTPATPSESSLPFGLPASSDAMVMPAAPAPAGDAH
VLPKQEEQQASFASSEVKAEAGGEAMEVDEASAPAEVKANGFAKEAA