Protein Info for mRNA_7059 in Rhodosporidium toruloides IFO0880

Name: 15427
Annotation: BLAST golgi apparatus membrane protein [Pochonia chlamy...

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 464 transmembrane" amino acids 108 to 131 (24 residues), see Phobius details amino acids 151 to 170 (20 residues), see Phobius details amino acids 178 to 198 (21 residues), see Phobius details amino acids 222 to 246 (25 residues), see Phobius details amino acids 267 to 293 (27 residues), see Phobius details amino acids 303 to 324 (22 residues), see Phobius details amino acids 331 to 348 (18 residues), see Phobius details amino acids 368 to 390 (23 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (464 amino acids)

>mRNA_7059 BLAST golgi apparatus membrane protein [Pochonia chlamy... (Rhodosporidium toruloides IFO0880)
MENTAPYAAYDHGQRNLSPHPSDPFNPLPTSTTPTDTPPLPSGAARPSYGYIEPSYSTYA
DQRQSYLGAEEEYPSRKGEAVQGPRGRLRRETGGFAAFWRTYRTRNQLAFMSIIALQAIV
VLVMIALVYGTNTGDLSTADLIGNDPKLESVATYLGLFILAVLFEAGITLDSCSHKNIMT
LAVLCLFNGAILIYSAVLPRQLANALSGSNADTPHVQHLTHIYAVVIPAVVGACTVAMTA
MLWPLYAEFGWDTFKRIGADLAIRRAYLRYQVFVCLLKFTAFFVIGFELQFLILVTGTPT
VEFVLTIVALPVTILALLAFAAVVRIENRPGVYASFFVIAAGLAYFIYKLQRIYGATSGR
YSTATATLTIFSVVCIILLVATFVMMGLCMRNFGKGLKERIPGYHLPFLSRTRQPDAGRP
LASQLSPQPPPLAAFEKPDSRRPGMPSGHSTSKYGGETDRMSID